View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7874_high_8 (Length: 358)
Name: NF7874_high_8
Description: NF7874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7874_high_8 |
 | |
|
| [»] scaffold0042 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 352
Target Start/End: Original strand, 18617518 - 18617853
Alignment:
| Q |
17 |
catattccacctacgattcttcttgcatgtacgtgtatataaacacaacaacttcacacaaaaacatgcacccctgtcttgtagaaacagagagtgtgtc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18617518 |
catattccacctacgattcttcttgcatgtatgtgtatataaacacaacaacttcacacaaaaacatgcacccctgtcttgtagaaacagagagtgtgtc |
18617617 |
T |
|
| Q |
117 |
tttgttacaagaagaaatcaccatcatcaccatggcatcttcaacctttccaacagtgaacaaatgcacctcaattggtagagaaaaacacacagtagta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
18617618 |
tttgttacaagaagaaatcaccatcatcaccatggcatcttcaacctttccaacagtgaacaaatgcacctccattggtagagaaaagcacacagtagta |
18617717 |
T |
|
| Q |
217 |
gcagacatggatggaaccttactaataggtcgtagttccttcccatattttgctcttatagcctttgaagttggtggagttcttagacttctcatctatc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18617718 |
gcagacatggatggaaccttactaataggtcgtagttcttttccatattttgctcttatagcctttgaagttggtggagttcttagacttctcatctatc |
18617817 |
T |
|
| Q |
317 |
tcctagcttcaccaatcgcagcgattctctgctact |
352 |
Q |
| |
|
|||||||||||||||| || |||||||||| ||||| |
|
|
| T |
18617818 |
tcctagcttcaccaatagccgcgattctctactact |
18617853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 115 - 253
Target Start/End: Original strand, 17159096 - 17159225
Alignment:
| Q |
115 |
tctttgttacaagaagaaatcaccatcatcaccatggcatcttcaacctttccaacagtgaacaaatgcacctcaattggtagagaaaaacacacagtag |
214 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
17159096 |
tctttgttacaagaagaaatcacca--------atggcatcttcaaccttttgaacagtgaacaaatgtacctcaattggtagagaaaagcacacagta- |
17159186 |
T |
|
| Q |
215 |
tagcagacatggatggaaccttactaataggtcgtagtt |
253 |
Q |
| |
|
||||| | ||||||| ||||||||||||||||||||||| |
|
|
| T |
17159187 |
tagcaaatatggatgaaaccttactaataggtcgtagtt |
17159225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 90499 - 90571
Alignment:
| Q |
115 |
tctttgttacaagaagaaatcaccatcatcacca-tggcatcttcaacctttccaacagtgaacaaatgcacc |
186 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
90499 |
tctttgttacaggaagaaatcaccaaaatcaccaatggcatcttcaacctttccaacaatgatcaaatgcacc |
90571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University