View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7874_low_1 (Length: 676)
Name: NF7874_low_1
Description: NF7874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7874_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 20 - 666
Target Start/End: Original strand, 336123 - 336769
Alignment:
| Q |
20 |
cactattctttcaatttttaccaaaactaaactagatgagtgacacattgccacatacacttcttataataataaataataggatatggtcatgtgagag |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
336123 |
cactattctttcaatttt-accaaaactaaactagatgagtgacacattgccacatacacttcttataataataaataataggatatggtcatgtgagag |
336221 |
T |
|
| Q |
120 |
tttgatatacacaagttagttaatt-atatagttaactcttttttaccgtaactctttcatttcatcataaattggagagtcctatcccagttactccaa |
218 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
336222 |
tttgatatacacaagttagttaatttatatagttaactcttttttaccgtaactctttcatttcatcataaattggagagtcctatcccagttactccaa |
336321 |
T |
|
| Q |
219 |
aacaagatcatatggatacattagcttcagaatgcagcagtgggtgtgagtctggatggactctataccttgaccgttctctcaatacctcacaatcaca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
336322 |
aacaagatcatatggatacattagcttcagaatgcagcagtgggtgtgagtctggatggactctataccttgaccgttctctcaatacctcacaatcaca |
336421 |
T |
|
| Q |
319 |
tacaccttcacttggttgttatgaagaaactaaacacaaaaaggctcaaaatattgaggactctgatgaagaggacttgtccatggtttctgatgcttct |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
336422 |
tacaccttcacttggttgttatgaagaaactaaacacaaaaaggctcaaaatattgaggactctgatgaagaggacttgtccatggtttctgatgcttct |
336521 |
T |
|
| Q |
419 |
tctggtcctccacaccatgactcttacttcaatgcacaagactgttctgcatctaagccaacaaaacttgttgccaagagaagtaaaaagagacagaaag |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
336522 |
tctggtcctccacaccatgactcttacttcaatgcacaagactgttctgcatctaagccaacaaaacttgttgccaagagaagtaaaaagagacagaaag |
336621 |
T |
|
| Q |
519 |
ttcaagaaaataataatattcagcagcaccttgatgacactgctagctctcctctctttgacaacaacaatgttgttactatgagcaaccaacaaacaac |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
336622 |
ttcaagaaaataataatattcagcagcaccttgatgacactgctagctctcctctctttgacaacaacaatgttgttactatgagcaaccaacaaacaac |
336721 |
T |
|
| Q |
619 |
ttcaacgacagagagtatgctagattattcacaaggcttctctgctac |
666 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
336722 |
ttcaacgacagagagtatgctagattattcacaaggcttctctgctac |
336769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 432
Target Start/End: Complemental strand, 48011872 - 48011835
Alignment:
| Q |
395 |
ttgtccatggtttctgatgcttcttctggtcctccaca |
432 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48011872 |
ttgtctatggtttctgatgcttcttctggtcctccaca |
48011835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 432
Target Start/End: Original strand, 47592048 - 47592082
Alignment:
| Q |
398 |
tccatggtttctgatgcttcttctggtcctccaca |
432 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
47592048 |
tccatggtttctgatgcttcttctggacctccaca |
47592082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University