View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7874_low_17 (Length: 250)

Name: NF7874_low_17
Description: NF7874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7874_low_17
NF7874_low_17
[»] chr2 (14 HSPs)
chr2 (14-245)||(43476413-43476643)
chr2 (117-250)||(13369294-13369427)
chr2 (117-245)||(5533321-5533449)
chr2 (117-237)||(17205770-17205890)
chr2 (124-250)||(20564748-20564875)
chr2 (169-245)||(5703104-5703180)
chr2 (117-245)||(20463997-20464124)
chr2 (64-244)||(14793703-14793879)
chr2 (159-250)||(18891106-18891197)
chr2 (178-237)||(24935063-24935122)
chr2 (178-237)||(25683756-25683815)
chr2 (160-222)||(36441801-36441862)
chr2 (146-250)||(37575529-37575634)
chr2 (66-107)||(42957462-42957503)
[»] chr3 (3 HSPs)
chr3 (152-250)||(52965252-52965350)
chr3 (122-245)||(7840438-7840561)
chr3 (152-229)||(46551753-46551830)
[»] chr8 (11 HSPs)
chr8 (117-245)||(13248541-13248669)
chr8 (117-245)||(9995167-9995295)
chr8 (178-239)||(38049609-38049670)
chr8 (65-226)||(41293818-41293976)
chr8 (117-244)||(24616911-24617038)
chr8 (122-236)||(39331103-39331217)
chr8 (152-236)||(232068-232152)
chr8 (152-236)||(708479-708563)
chr8 (152-236)||(745691-745775)
chr8 (152-236)||(869586-869670)
chr8 (159-245)||(43801015-43801101)
[»] chr6 (7 HSPs)
chr6 (117-250)||(24495797-24495930)
chr6 (117-225)||(9606381-9606488)
chr6 (149-236)||(24261763-24261850)
chr6 (117-222)||(31261573-31261677)
chr6 (178-237)||(35165895-35165954)
chr6 (152-238)||(8770498-8770584)
chr6 (120-244)||(31834003-31834127)
[»] chr5 (4 HSPs)
chr5 (117-249)||(4421716-4421848)
chr5 (160-236)||(35606345-35606421)
chr5 (159-245)||(6010511-6010597)
chr5 (117-213)||(3972589-3972684)
[»] chr4 (9 HSPs)
chr4 (159-245)||(24221313-24221399)
chr4 (159-247)||(26687842-26687930)
chr4 (159-245)||(41477968-41478054)
chr4 (117-245)||(50142260-50142388)
chr4 (117-221)||(33616013-33616117)
chr4 (117-239)||(23184626-23184748)
chr4 (117-245)||(16821618-16821750)
chr4 (141-213)||(30544243-30544315)
chr4 (178-224)||(20066175-20066221)
[»] chr1 (10 HSPs)
chr1 (117-245)||(42667133-42667261)
chr1 (117-250)||(19263601-19263734)
chr1 (124-230)||(28882365-28882471)
chr1 (152-250)||(32829879-32829977)
chr1 (117-250)||(28251376-28251508)
chr1 (152-239)||(17189507-17189594)
chr1 (159-247)||(31964112-31964200)
chr1 (117-236)||(14190353-14190472)
chr1 (152-238)||(14795518-14795604)
chr1 (146-238)||(8059095-8059187)
[»] chr7 (5 HSPs)
chr7 (159-244)||(8236272-8236357)
chr7 (118-237)||(24685945-24686064)
chr7 (117-244)||(44523954-44524080)
chr7 (161-235)||(49105404-49105478)
chr7 (169-245)||(26625945-26626021)
[»] scaffold0688 (2 HSPs)
scaffold0688 (178-245)||(3765-3832)
scaffold0688 (204-245)||(2127-2168)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 43476413 - 43476643
Alignment:
Q  14 atataggatactctagtttttgtgaggtaaaatacccatccatatatggtccataacctttattatttttcttctaccatatggaaataaagatnnnnnn 113  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||          
T  43476413 atataggatactccagtttttgtgaggtaaaatacccatccatatatggtccataacctttagtatttttcttctaccatatggaaataaagat-aaaaa 43476511  T
Q  114 nnntattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatac 213  Q
       ||| |||||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||    
T  43476512 aaatatcgacattattgaataagtgaattttttgaatctgggtccagttttacccgaaactcacttatttgtttgggttttcaatttttagaagccatac 43476611  T
Q  214 ccacccaattacccaactcaacccatattttt 245  Q
    ||||||||||| ||   |||||||||||||||    
T  43476612 ccacccaattatccggttcaacccatattttt 43476643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 13369427 - 13369294
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| |||||||||  ||||||  |||| ||||| |||||| ||||||||| ||||| || |||||| ||||||||||| ||||||| ||||||||||||    
T  13369427 tattaacattattgggtaagtgggttttttgagtttgggtctggttttaccagaaacccatttatttttatgggttttccatttttataaaccataccca 13369328  T
Q  217 cccaattacccaactcaacccatatttttaggtt 250  Q
    ||||||||| |||  |||||||| ||||||||||    
T  13369327 cccaattactcaatccaacccatttttttaggtt 13369294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 245
Target Start/End: Complemental strand, 5533449 - 5533321
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    ||||||||||||||  ||| ||| |||| || ||||||| | ||||||||| ||||| || |||||| ||||||||||  ||||||||||||||||||||    
T  5533449 tattgacattattgggtaaatgagttttttgggtctgggcctggttttacccgaaacccaattatttttatgggtttttcatttttagaaaccataccca 5533350  T
Q  217 cccaattacccaactcaacccatattttt 245  Q
    |||||||||| |||||| ||||| |||||    
T  5533349 cccaattacctaactcatcccattttttt 5533321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 117 - 237
Target Start/End: Complemental strand, 17205890 - 17205770
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| |||||||||  ||||||  |||| || || |||||| ||||||||||||||| || ||||||||||| ||||| ||||||||||||||||| |||    
T  17205890 tattaacattattgggtaagtgggttttttgggtttgggtctggttttacctgaaacccatttatttgtatgtgtttttaatttttagaaaccatatcca 17205791  T
Q  217 cccaattacccaactcaaccc 237  Q
    | |||||||||||| ||||||    
T  17205790 ctcaattacccaacccaaccc 17205770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 250
Target Start/End: Complemental strand, 20564875 - 20564748
Alignment:
Q  124 attattgaataagtgaattttat-gagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaat 222  Q
    ||||||| |||||||| |||| | | || |||||| ||||||||| ||||  || |||||| ||||| ||||| ||||||||||||||||||||||||||    
T  20564875 attattggataagtgagtttttttgggtttgggtctggttttacccgaaatccatttatttttatggattttccatttttagaaaccatacccacccaat 20564776  T
Q  223 tacccaactcaacccatatttttaggtt 250  Q
    |||||||| || || || ||||||||||    
T  20564775 tacccaacccagcctatttttttaggtt 20564748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 5703104 - 5703180
Alignment:
Q  169 gaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacccatattttt 245  Q
    |||||||| |||||| ||||||||||| |||||||||||||||||||||||||||| ||||| ||||| || |||||    
T  5703104 gaaactcatttatttttatgggttttccatttttagaaaccatacccacccaattatccaacccaacctattttttt 5703180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 117 - 245
Target Start/End: Complemental strand, 20464124 - 20463997
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| ||||||||| |||||||| |||| || || |||||| |||||||||  | || || |||||| ||||||||||  |||||||||||||||| |||    
T  20464124 tattaacattattggataagtgagtttt-tgggtttgggtctggttttacccaagacccatttatttttatgggtttttcatttttagaaaccataacca 20464026  T
Q  217 cccaattacccaactcaacccatattttt 245  Q
    |||||||| | ||| |||||||| |||||    
T  20464025 cccaattatcaaacccaacccattttttt 20463997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 244
Target Start/End: Original strand, 14793703 - 14793879
Alignment:
Q  64 ccataacctttattatttttcttctaccatatggaaataaagatnnnnnnnnntattgacattattgaataagtgaattttatgagtctgggtccggttt 163  Q
    |||||||||||| ||||||||||||||| |||| |||||||| |         ||||||||||||||  |||||| ||||| || || || ||| | |||    
T  14793703 ccataacctttagtatttttcttctaccctatgaaaataaagttaaaaa----tattgacattattgggtaagtggattttttgggtttgagtctgattt 14793798  T
Q  164 tacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacccatatttt 244  Q
     | | ||||| || |||||| |||||||||   |||||| |||||||||| ||||||||||||| || |||||||| ||||    
T  14793799 gatccgaaacccatttatttttatgggtttgtcatttttggaaaccatactcacccaattacccgacccaacccatttttt 14793879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 18891106 - 18891197
Alignment:
Q  159 ggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacccatatttttaggtt 250  Q
    ||||||||| || || || ||| || ||||| ||||  ||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||    
T  18891106 ggttttacccgagacccatttacttttatggatttttcatttttaaaaaccatacccacccaattacccaacccaacccatttttttgggtt 18891197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 24935122 - 24935063
Alignment:
Q  178 ttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaaccc 237  Q
    |||||| | ||||||| | |||||||||||||||||||||||||||  ||||| ||||||    
T  24935122 ttatttttgtgggtttcccatttttagaaaccatacccacccaattttccaacccaaccc 24935063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 25683815 - 25683756
Alignment:
Q  178 ttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaaccc 237  Q
    |||||| | ||||||| | |||||||||||||||||||||||||||  ||||| ||||||    
T  25683815 ttatttttgtgggtttcccatttttagaaaccatacccacccaattttccaacccaaccc 25683756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 36441801 - 36441862
Alignment:
Q  160 gttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaat 222  Q
    |||||||| ||||| || |||||| ||||||||||| ||||||| ||| ||||||||||||||    
T  36441801 gttttacccgaaacccatttatttttatgggttttccatttttataaa-catacccacccaat 36441862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 37575634 - 37575529
Alignment:
Q  146 tgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactc-aacccatatttt 244  Q
    ||||| ||||||||||||||||  |||| || |  ||| ||||||||||  ||||||  ||| |||| ||||||||| ||||||||| ||||||  ||||    
T  37575634 tgagtatgggtccggttttacccaaaacccattattttttatgggtttttcattttttaaaatcatatccacccaatcacccaactcaaacccacttttt 37575535  T
Q  245 taggtt 250  Q
    ||||||    
T  37575534 taggtt 37575529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 42957462 - 42957503
Alignment:
Q  66 ataacctttattatttttcttctaccatatggaaataaagat 107  Q
    |||||||||| ||||||||||||||| |||| ||||||||||    
T  42957462 ataacctttagtatttttcttctaccctatgaaaataaagat 42957503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 52965350 - 52965252
Alignment:
Q  152 tgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacccatatttttaggtt 250  Q
    |||||| ||||||||| ||||| || |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  52965350 tgggtctggttttacccgaaacccatttatttttatgggttttctatttttagaaaccatacccatccaattacccaactcaacccatttttttgggtt 52965252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 7840561 - 7840438
Alignment:
Q  122 acattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaa 221  Q
    |||||| ||| |||||||||||| || || |||||  ||||||||| ||||  || |||||| ||||||||||| ||||| |||||||||||||||| ||    
T  7840561 acattactgagtaagtgaattttttgggtttgggtatggttttacccgaaatccatttatttttatgggttttccattttgagaaaccatacccacctaa 7840462  T
Q  222 ttacccaactcaacccatattttt 245  Q
    |||||||||||||||||| |||||    
T  7840461 ttacccaactcaacccattttttt 7840438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 46551830 - 46551753
Alignment:
Q  152 tgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaa 229  Q
    |||||| | ||||||| |||||||| |||||| ||||||||||| |||||||||||||||| ||| ||||||||||||    
T  46551830 tgggtctgattttacccgaaactcatttatttttatgggttttccatttttagaaaccatatccatccaattacccaa 46551753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 13248541 - 13248669
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| |||||||||  ||||||| |||| || || || ||| ||||||||| ||||| || |||||| |||||||||||  |||||||||||||||||||    
T  13248541 tattaacattattgggtaagtgagttttttgggtttgagtctggttttacccgaaacccatttatttttatgggttttccgtttttagaaaccataccca 13248640  T
Q  217 cccaattacccaactcaacccatattttt 245  Q
    |||||||||||||| |||||||| |||||    
T  13248641 cccaattacccaacccaacccattttttt 13248669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 9995167 - 9995295
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| |||||||||| |||||| ||||| || || |  ||| ||||||||| ||||| || |||||| ||||||||||| ||||||| ||||||||||||    
T  9995167 tattaacattattgagtaagtggattttttgggttttagtctggttttacccgaaacccatttatttttatgggttttccatttttaaaaaccataccca 9995266  T
Q  217 cccaattacccaactcaacccatattttt 245  Q
    |||||||||||||| ||| |||| |||||    
T  9995267 cccaattacccaacacaatccattttttt 9995295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 38049670 - 38049609
Alignment:
Q  178 ttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacccat 239  Q
    |||||| ||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  38049670 ttatttttatgggttttctatttttagaaaccatatccacccaattacccaacccaacccat 38049609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 41293818 - 41293976
Alignment:
Q  65 cataacctttattatttttcttctaccatatggaaataaagatnnnnnnnnntattgacattattgaataagtgaattttatgagtctgggtccggtttt 164  Q
    ||||||||||| ||||||||||||||| |||| ||||||||||         ||||||| ||||||| |||||| ||||  |||||||| |||   ||||    
T  41293818 cataacctttagtatttttcttctaccctatgaaaataaagataaaaaa---tattgaccttattgagtaagtggatttattgagtctgagtctaatttt 41293914  T
Q  165 acctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacc 226  Q
    |||  |||   | |||||| |||||| |||  ||||||||||||||||||||||||||||||    
T  41293915 acccaaaatcgatttatttttatggggttttcatttttagaaaccatacccacccaattacc 41293976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 244
Target Start/End: Complemental strand, 24617038 - 24616911
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| ||||||||| |||||||  |||| || || || ||| ||||||||| || ||||  |||||| | || |||||  ||||||| ||||||||||||    
T  24617038 tattaacattattggataagtgggttttttgggtttgagtctggttttacccgatactcgtttatttttgtgagtttttcatttttaaaaaccataccca 24616939  T
Q  217 cccaattacccaactcaacccatatttt 244  Q
    ||||||||| |||| |||||||| ||||    
T  24616938 cccaattactcaacccaacccatttttt 24616911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 39331103 - 39331217
Alignment:
Q  122 acattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaa 221  Q
    |||||||||  |||||| ||||| |  || ||| || |||||||||  |||| || |||||| |||| |||||  |||||||||||| ||||||||||||    
T  39331103 acattattgggtaagtggattttttaggtttggatctggttttacccaaaacccatttatttttatgagtttttcatttttagaaacgatacccacccaa 39331202  T
Q  222 ttacccaactcaacc 236  Q
    ||||||||| |||||    
T  39331203 ttacccaacccaacc 39331217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 232152 - 232068
Alignment:
Q  152 tgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacc 236  Q
    ||||||||||||||||  ||||||| |  ||| ||||||||||  ||||||  |||||||| ||||||||| ||||||| |||||    
T  232152 tgggtccggttttacccaaaactcattattttttatgggtttttcattttttaaaaccatatccacccaatcacccaacccaacc 232068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 708563 - 708479
Alignment:
Q  152 tgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacc 236  Q
    ||||||||||||||||  ||||||| |  ||| ||||||||||  ||||||  |||||||| ||||||||| ||||||| |||||    
T  708563 tgggtccggttttacccaaaactcattattttttatgggtttttcattttttaaaaccatatccacccaatcacccaacccaacc 708479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 745775 - 745691
Alignment:
Q  152 tgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacc 236  Q
    ||||||||||||||||  ||||||| |  ||| ||||||||||  ||||||  |||||||| ||||||||| ||||||| |||||    
T  745775 tgggtccggttttacccaaaactcattattttttatgggtttttcattttttaaaaccatatccacccaatcacccaacccaacc 745691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 869670 - 869586
Alignment:
Q  152 tgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacc 236  Q
    ||||||||||||||||  ||||||| |  ||| ||||||||||  ||||||  |||||||| ||||||||| ||||||| |||||    
T  869670 tgggtccggttttacccaaaactcattattttttatgggtttttcattttttaaaaccatatccacccaatcacccaacccaacc 869586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 43801015 - 43801101
Alignment:
Q  159 ggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacccatattttt 245  Q
    ||||||||| || || || |||||| ||||||||||  ||||||| |||||||| |||  |||||||||||  |||||||| |||||    
T  43801015 ggttttacccgagacccatttatttttatgggtttttcatttttaaaaaccatatccattcaattacccaatccaacccattttttt 43801101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 24495930 - 24495797
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| ||||||||| |||||||| |||| ||  | || ||| ||||||||| ||||  || |||||||||||| ||||| ||||||||||||||||||||    
T  24495930 tattaacattattggataagtgagttttttggatttgagtctggttttacccgaaatccatttatttgtatggattttctatttttagaaaccataccca 24495831  T
Q  217 cccaattacccaactcaacccatatttttaggtt 250  Q
    |||||||||||||| |||| |||  |||||||||    
T  24495830 cccaattacccaacccaacgcattattttaggtt 24495797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 225
Target Start/End: Original strand, 9606381 - 9606488
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| |||||||||| ||||||| |||| || || |||||| ||||||||| ||||| || |||||| |||| |||||| ||||||||||||||||||||    
T  9606381 tattaacattattgagtaagtgagtttt-tgggtttgggtctggttttacccgaaacccatttatttttatgagttttccatttttagaaaccataccca 9606479  T
Q  217 cccaattac 225  Q
    ||| |||||    
T  9606480 cccgattac 9606488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 24261763 - 24261850
Alignment:
Q  149 gtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacc 236  Q
    ||||||||| ||||||||| ||||| || ||| || ||||||||||   ||||||||||||||||||||||||||||| ||| |||||    
T  24261763 gtctgggtctggttttacccgaaacccatttacttttatgggtttttcgtttttagaaaccatacccacccaattaccaaacccaacc 24261850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 31261573 - 31261677
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| |||||||||  |||||| ||||| || || |||||| | ||||||||||||| || |||||| ||| ||||||| | ||||||||||||||||||    
T  31261573 tattaacattattgggtaagtggattttttgggtttgggtctgattttacctgaaacccatttatttttattggttttcca-ttttagaaaccataccca 31261671  T
Q  217 cccaat 222  Q
    ||||||    
T  31261672 cccaat 31261677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 35165895 - 35165954
Alignment:
Q  178 ttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaaccc 237  Q
    |||||| | ||||||| | |||||||||||||||||||||||||||  ||||| ||||||    
T  35165895 ttatttttgtgggtttcccatttttagaaaccatacccacccaattttccaacccaaccc 35165954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 8770498 - 8770584
Alignment:
Q  152 tgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaaccca 238  Q
    ||||||||||||||||  |||| || |  ||| ||||||||||  ||||||  |||||||| ||||||||| ||||||| |||||||    
T  8770498 tgggtccggttttacccaaaacccattattttttatgggtttttcattttttaaaaccatatccacccaatcacccaacccaaccca 8770584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 244
Target Start/End: Complemental strand, 31834127 - 31834003
Alignment:
Q  120 tgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttt-tcaatttttagaaaccatacccacc 218  Q
    ||||||||||| |||||||  |||  || ||||||||| |||||||||  |||| || |  ||| ||||||||| ||| |||||| |||||||| |||||    
T  31834127 tgacattattggataagtgggtttattgggtctgggtctggttttacccaaaacccattattttttatgggtttatcatttttta-aaaccatatccacc 31834029  T
Q  219 caattacccaactcaacccatatttt 244  Q
    |||| ||||||| ||| |||| ||||    
T  31834028 caatcacccaacccaatccatttttt 31834003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 117 - 249
Target Start/End: Original strand, 4421716 - 4421848
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| |||||||||  ||||||| |||| || || |||||| ||||||||||||||| || |||||| |||||||||||  |||||||||| ||||||||    
T  4421716 tattaacattattgggtaagtgagttttttgggtttgggtctggttttacctgaaacccatttatttttatgggttttccgtttttagaaatcataccca 4421815  T
Q  217 cccaattacccaactcaacccatatttttaggt 249  Q
    |||| ||| ||||| ||| |||| |||||||||    
T  4421816 cccatttatccaacccaagccatttttttaggt 4421848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 35606345 - 35606421
Alignment:
Q  160 gttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacc 236  Q
    |||||||| ||||| || |||||| |||| |||||| ||||||||||||||||||||| |||||||||||| |||||    
T  35606345 gttttacccgaaacccatttatttttatgagttttccatttttagaaaccatacccacacaattacccaacccaacc 35606421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 6010597 - 6010511
Alignment:
Q  159 ggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacccatattttt 245  Q
    ||||||||  ||||| || |||||| ||||||||||  |||||||||||||||||||||| ||||||| ||| |||||||| |||||    
T  6010597 ggttttactcgaaacccatttatttttatgggtttttcatttttagaaaccatacccacctaattacctaacccaacccattttttt 6010511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 3972589 - 3972684
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatac 213  Q
    ||||||||||||||  |||||||||||| |   | |||||  ||||||||| ||||| |  |||||| ||||||||||  |||||||||||||||||    
T  3972589 tattgacattattgggtaagtgaatttttttgatttgggtttggttttacccgaaacccgtttattt-tatgggttttttatttttagaaaccatac 3972684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 24221399 - 24221313
Alignment:
Q  159 ggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacccatattttt 245  Q
    ||||||||| ||||| || |||||| ||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |||||    
T  24221399 ggttttacccgaaacccatttatttttatgggttttccatttttagaaaccatatccacccaattacccaacacaacccattttttt 24221313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 26687930 - 26687842
Alignment:
Q  159 ggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacccatatttttag 247  Q
    ||||||||| ||||| || |||||| ||||||||||| |||||||||||||||||| |||||||||  ||||||||||||| |||||||    
T  26687930 ggttttacccgaaacccatttatttttatgggttttccatttttagaaaccataccaacccaattattcaactcaacccatttttttag 26687842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 41477968 - 41478054
Alignment:
Q  159 ggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacccatattttt 245  Q
    ||||||||  ||||| || |||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  41477968 ggttttactcgaaacccatttatttttatggattttccatttttaaaaaccatacccacccaattacccaactcaacccattttttt 41478054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 50142260 - 50142388
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| |||||||||  ||||||| |||| || || | |||  ||||||||| ||||| || |||||| ||||||||||  | |||||||||||||| |||    
T  50142260 tattaacattattgggtaagtgagttttttgggttttggtgtggttttacccgaaacccatttatttttatgggtttttcaattttagaaaccatatcca 50142359  T
Q  217 cccaattacccaactcaacccatattttt 245  Q
     ||||||||||||| |||||||| |||||    
T  50142360 tccaattacccaacccaacccattttttt 50142388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 33616013 - 33616117
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| |||||||||  |||||| ||||| || || |||||| | ||||||| ||||| || |||||| ||||||||||  ||||||||||||||||||||    
T  33616013 tattaacattattgggtaagtggattttttgggtttgggtctgattttacccgaaacccatttatttttatgggtttttcatttttagaaaccataccca 33616112  T
Q  217 cccaa 221  Q
     ||||    
T  33616113 tccaa 33616117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 23184748 - 23184626
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| ||||||||| ||||||| ||||| || || | |||| ||||||||  || || || |||||| | ||| ||||   |||||||||| ||||||||    
T  23184748 tattaacattattggataagtggattttttgggtttaggtctggttttacgcgagacccatttatttttttggatttttcgtttttagaaagcataccca 23184649  T
Q  217 cccaattacccaactcaacccat 239  Q
    |||||||||||||| ||||||||    
T  23184648 cccaattacccaacccaacccat 23184626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 245
Target Start/End: Complemental strand, 16821750 - 16821618
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttaga-----aaccat 211  Q
    |||| |||||||||  |||||| ||||| || || || ||| ||||||| | ||||| || |||||| |||||||||||||||||||||     ||||||    
T  16821750 tattaacattattgggtaagtggattttttg-gtttgtgtctggttttatccgaaacccatttatttttatgggttttcaatttttagaaatgtaaccat 16821652  T
Q  212 acccacccaattacccaactcaacccatattttt 245  Q
    |||||||||||| | ||||  ||||||| |||||    
T  16821651 acccacccaattgctcaacctaacccattttttt 16821618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 30544243 - 30544315
Alignment:
Q  141 ttttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatac 213  Q
    |||| ||||| ||| || ||||||||| |||| ||| |||||| ||||||||||  |||||||||||||||||    
T  30544243 ttttttgagtttggatctggttttacccgaaattcatttatttttatgggtttttcatttttagaaaccatac 30544315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 20066175 - 20066221
Alignment:
Q  178 ttatttgtatgggttttcaatttttagaaaccatacccacccaatta 224  Q
    |||||| ||| ||||||  ||||||||||||||||||||||||||||    
T  20066175 ttatttttataggtttttcatttttagaaaccatacccacccaatta 20066221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 42667133 - 42667261
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| |||||||||  |||||||||||| || || |||||| ||||||||| || || || |||||| ||||  ||||  ||||||| ||||||||||||    
T  42667133 tattaacattattgcgtaagtgaattttttgggtttgggtctggttttacccgagacccatttatttttatgaatttttcatttttaaaaaccataccca 42667232  T
Q  217 cccaattacccaactcaacccatattttt 245  Q
    |||||||||||||| |||||||| |||||    
T  42667233 cccaattacccaacccaacccattttttt 42667261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 19263734 - 19263601
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| |||||||||  ||||||  |||| || || || ||| ||||||||| ||||| || |||||| ||||||||||  ||||||||||||||| ||||    
T  19263734 tattaacattattgggtaagtgggttttttgggtttgagtctggttttacccgaaacccatttatttttatgggtttttcatttttagaaaccatgccca 19263635  T
Q  217 cccaattacccaactcaacccatatttttaggtt 250  Q
    |||||||||||||| || ||||| ||||| ||||    
T  19263634 cccaattacccaacccagcccattttttttggtt 19263601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 28882365 - 28882471
Alignment:
Q  124 attattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaatt 223  Q
    |||||||  |||||| ||||| ||||| |||||| | |||||||  |||| ||  ||||| ||||||||||  |||||||||||||||||||||||||||    
T  28882365 attattgggtaagtggattttttgagtttgggtctgattttacccaaaacccatatatttttatgggtttttcatttttagaaaccatacccacccaatt 28882464  T
Q  224 acccaac 230  Q
    |||||||    
T  28882465 acccaac 28882471  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 32829879 - 32829977
Alignment:
Q  152 tgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacccatatttttaggtt 250  Q
    |||||| ||||||| | ||||| || |||||| ||||||||||| |||||| ||||||| ||||||| ||||||||||| |||||||| ||||| ||||    
T  32829879 tgggtctggttttatccgaaacccatttatttttatgggttttccattttttgaaaccacacccacctaattacccaacccaacccatttttttgggtt 32829977  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 28251376 - 28251508
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| ||||||||| |||||||  |||| || ||||||||  | ||||||| || || || |||||| ||||| ||||| ||||| |||||||| |||||    
T  28251376 tattaacattattggataagtgggttttttgggtctgggtttgattttacccgagacccatttatttttatggattttccatttt-agaaaccacaccca 28251474  T
Q  217 cccaattacccaactcaacccatatttttaggtt 250  Q
    |||||||| ||||| |||||||| ||||| ||||    
T  28251475 cccaattatccaacccaacccatttttttgggtt 28251508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 17189594 - 17189507
Alignment:
Q  152 tgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacccat 239  Q
    |||||| |||| ||| |||||| |  |||||| |||| |||||| ||||||||||||||||| |||||||||||||||  ||||||||    
T  17189594 tgggtctggttatacatgaaacccgtttatttttatgcgttttctatttttagaaaccatactcacccaattacccaatccaacccat 17189507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 31964200 - 31964112
Alignment:
Q  159 ggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacccatatttttag 247  Q
    ||||||||| ||||| || |||||| ||| | ||||  |||||| |||||||||||||||| ||||||| || |||||||| |||||||    
T  31964200 ggttttacccgaaacccatttatttttatagatttttcattttttgaaaccatacccaccctattacccgacccaacccatttttttag 31964112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 14190353 - 14190472
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| |||||||||  ||||||| |||| ||  | ||||||  |||||||| || || || |||||| |||| | |||  ||||||| ||||||||||||    
T  14190353 tattaacattattgggtaagtgagttttttggatttgggtcttgttttacccgagacccatttatttttatgtgattttcatttttaaaaaccataccca 14190452  T
Q  217 cccaattacccaactcaacc 236  Q
    |||||||||||||| |||||    
T  14190453 cccaattacccaacccaacc 14190472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 14795604 - 14795518
Alignment:
Q  152 tgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaaccca 238  Q
    ||||||||||||||||  |||| || |  ||| ||||||||||  ||||||  |||||||| ||||||||| ||||||| |||||||    
T  14795604 tgggtccggttttacccaaaacccattattttttatgggtttttcattttttaaaaccatatccacccaatcacccaacccaaccca 14795518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 8059187 - 8059095
Alignment:
Q  146 tgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaaccca 238  Q
    ||||| ||||||| ||||||||  |||| || |  ||| ||||||||||  ||||||  ||||||||  |||||||| |||||||||||||||    
T  8059187 tgagtatgggtcctgttttacccaaaacccattattttttatgggtttttcattttttaaaaccatattcacccaatcacccaactcaaccca 8059095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 8236272 - 8236357
Alignment:
Q  159 ggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacccatatttt 244  Q
    ||||||||| || || || |||||| ||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| ||||    
T  8236272 ggttttaccggagacccatttatttttatgggttttccatttttagaaaccatacccacccaattacctaacccaacccatttttt 8236357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 237
Target Start/End: Original strand, 24685945 - 24686064
Alignment:
Q  118 attgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccac 217  Q
    ||||||||||||| |||| |||  ||| || ||||| ||  ||||||||| ||||| || |||||| |||| |||||  |||||||||||||||||||||    
T  24685945 attgacattattggataaatgagatttttgggtctgagtttggttttacccgaaacccatttatttttatgagtttttcatttttagaaaccatacccac 24686044  T
Q  218 ccaattacccaactcaaccc 237  Q
    ||| ||||||  ||||||||    
T  24686045 ccacttacccggctcaaccc 24686064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 244
Target Start/End: Complemental strand, 44524080 - 44523954
Alignment:
Q  117 tattgacattattgaataagtgaattttatgagtctgggtccggttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccataccca 216  Q
    |||| ||||||||| ||||||| ||||| || || || |||  |||||||| ||||  || |||||| ||||||||||| ||||||||||| ||||||||    
T  44524080 tattaacattattggataagtggattttttgggtttgagtctagttttacccgaaatccatttatttttatgggttttccatttttagaaa-cataccca 44523982  T
Q  217 cccaattacccaactcaacccatatttt 244  Q
    || ||||||||||  |||||||| ||||    
T  44523981 cctaattacccaatccaacccatttttt 44523954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 49105478 - 49105404
Alignment:
Q  161 ttttacctgaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaac 235  Q
    ||||||| ||||  || |||||| ||||| ||||| ||||||||||||||||||||| |||||| ||||| ||||    
T  49105478 ttttacccgaaatccatttatttttatggattttccatttttagaaaccatacccacgcaattatccaacccaac 49105404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 26625945 - 26626021
Alignment:
Q  169 gaaactcacttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacccatattttt 245  Q
    ||||| || |||||| ||||||||||  ||||||| ||| |||||| ||||||||||| ||| ||| |||| |||||    
T  26625945 gaaacccatttatttttatgggtttttcatttttaaaaatcatacctacccaattaccaaacccaatccattttttt 26626021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 3832 - 3765
Alignment:
Q  178 ttatttgtatgggttttcaatttttagaaaccatacccacccaattacccaactcaacccatattttt 245  Q
    |||||| ||||||||||  ||||||||| |||||||||||||||||| ||||| |||||||| |||||    
T  3832 ttatttttatgggtttttcatttttagagaccatacccacccaattagccaacccaacccattttttt 3765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 2168 - 2127
Alignment:
Q  204 gaaaccatacccacccaattacccaactcaacccatattttt 245  Q
    ||||||||||||||||||||||||||| |||||||| |||||    
T  2168 gaaaccatacccacccaattacccaacccaacccattttttt 2127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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