View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7874_low_18 (Length: 236)
Name: NF7874_low_18
Description: NF7874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7874_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 43476995 - 43476891
Alignment:
| Q |
18 |
tttagaggtttaaaacacattttatggtgagaccttttaaatttacaagttaa----catgtaaatatgttacattttgtgggtacattatgtaaagatg |
113 |
Q |
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| T |
43476995 |
tttagatgtttaaaacacattttatagtgagaccttttaaatttacaagttaacatgcatgtaaatatgttacattttgtgggtacattatgt-aagatg |
43476897 |
T |
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| Q |
114 |
tcattc |
119 |
Q |
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|||||| |
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| T |
43476896 |
tcattc |
43476891 |
T |
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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 43476838 - 43476791
Alignment:
| Q |
172 |
catgataagtccaagttttgaacctaaaccatcggtatataagtcttc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43476838 |
catgataagtccaagttttgaacctaaaccatcggtatataagtcttc |
43476791 |
T |
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