View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7874_low_2 (Length: 618)
Name: NF7874_low_2
Description: NF7874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7874_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 18 - 607
Target Start/End: Complemental strand, 3440556 - 3439967
Alignment:
| Q |
18 |
aatgtgaccaactctttcgagctggagtactacaatcaatctcagttttgtccttgaactgcaaggcgtgcaactgatgcaaaacattgtactcaacata |
117 |
Q |
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| T |
3440556 |
aatgtgactaactctttcgagctggagtactacaatcaatctcagttttgtccttgaactgcaaggcgtgcaactgatgcaaaacattgtactcaacata |
3440457 |
T |
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| Q |
118 |
gacctattcctacttcaaatatcatccagccaaacaatggcaaattacaaggctactatacctaaacnnnnnnngattagtgcaagtaatgcaaaacata |
217 |
Q |
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| T |
3440456 |
gacctattcctacttcaaatatcatccagccaaacaatggcaaattacaaggctactatacctaaacaaaaaaatattagtgcaagtaatgcaaaacata |
3440357 |
T |
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| Q |
218 |
aacctattcctgcttcaaatatcatcagccagacaatggcaaattaccaggccattatccctaaacaaaaaagatgtctagaaaacaagtacatgttctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3440356 |
aacctattcctgcttcaaatatcatcagccagacaatggcaaattaccaggccattatccctaaacaaaaaagatgtctagaaaacaagtacatgttctt |
3440257 |
T |
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| Q |
318 |
cagtcctcaggattacaacagcggagtactttctccttttcagacagcaaattttccgcttttctctttctgagctcaccaactattttattaacatatg |
417 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3440256 |
cagtcctcaggattacaacagcggcgtactttctccttttcagacagcaaattttccgcttttctctttctgagctcaccaactattttattaacatatg |
3440157 |
T |
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| Q |
418 |
caatgtatctgtcaacatcaaattttcttttgcacccttcgtaattcatgtatcgaattttcccaaaaatgggacgctctcgccacccctgaaatgaata |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3440156 |
caatgtatctgtcaacatcaaattttcttttgcacccttcgtaattcatgtatcgaattttcccaaaaatgggacgctctcgccacccctgaaatgaata |
3440057 |
T |
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| Q |
518 |
gaagcacaaataccaaaaactgagaaatcttgaagaaaatttacacttctagttctacatgatttttatacaatcccctgcaacaccaaa |
607 |
Q |
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| T |
3440056 |
gaagcacaaataccaaaaactgagaaatcttgaagaaaatttacacttctagctctacatgatttttatacaatcccctgcaacaccaaa |
3439967 |
T |
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