View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7874_low_6 (Length: 412)
Name: NF7874_low_6
Description: NF7874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7874_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 62 - 396
Target Start/End: Original strand, 3314996 - 3315330
Alignment:
| Q |
62 |
aaatttgactatgattatatttgtgtggtacataaataaatttataattggaccagtgtcaacctcaattactctgcattaaccaacaatactaataaca |
161 |
Q |
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| T |
3314996 |
aaattttactatgattatatttgtgtggtacataaataaatttataattggaccagtgtcaacctcaattactctgcattaaccaacaatactaataaca |
3315095 |
T |
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| Q |
162 |
attcaaataatgtaaccacnnnnnnnntattgctttatatattaagttggtatactacatttcatcatatagaaacatgtctcttaattttttactttcc |
261 |
Q |
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| T |
3315096 |
attcaaataatgtaaccacaaaaaaaatattgctttatatattaagtttgtatactacatttcatcacatagaaacatgtctcttaattttttactttcc |
3315195 |
T |
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| Q |
262 |
ttaggtggacctagaggattcagtgatgttctttggaaagtggaaaagcatgtaagagaaggtgatcaacccctgatcaaattcggttaccacagttttg |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3315196 |
ttaggtggacctagaggattcagtgatgttctttggaaagtggaaaagtatgtaagagaaggtgatcaacccctgataaaattcggttaccacagttttg |
3315295 |
T |
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| Q |
362 |
atggtgaagaaggtatgcactaatcaatatcatta |
396 |
Q |
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| T |
3315296 |
atggtgaagaaggtatgcactaatcaatatcatta |
3315330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 262 - 389
Target Start/End: Original strand, 3322028 - 3322155
Alignment:
| Q |
262 |
ttaggtggacctagaggattcagtgatgttctttggaaagtggaaaagcatgtaagagaaggtgatcaacccctgatcaaattcggttaccacagttttg |
361 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3322028 |
ttaggtggaactagaggattcagtgatgttctttggaaagtagaaaggtatgtaagagaaggtgatcaacccctgatcaaattcagttaccacagttttg |
3322127 |
T |
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| Q |
362 |
atggtgaagaaggtatgcactaatcaat |
389 |
Q |
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| T |
3322128 |
atggtgaacaaggtaagcagtaaacaat |
3322155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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