View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7874_low_8 (Length: 366)

Name: NF7874_low_8
Description: NF7874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7874_low_8
NF7874_low_8
[»] chr2 (1 HSPs)
chr2 (56-355)||(42672970-42673269)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 56 - 355
Target Start/End: Complemental strand, 42673269 - 42672970
Alignment:
Q  56 ccatgctattctgaaagataactcaagcaatggagaaacagttcaattttccacatgttaacaaagttagtctctcatatatgcttaaaatttttaaact 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42673269 ccatgctattctgaaagataactcaagcaatggagaaacagttcaattttccacatgttaacaaagttagtctctcatatatgcttaaaatttttaaact 42673170  T
Q  156 ctcatataatgataaaagtgagtgactcggtaatttaaaataataatgaagaacttaccgaatcttggttgtcatctgatagggatatcctccgtggata 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42673169 ctcatataatgataaaagtgagtgactcggtaatttaaaataataatgaagaacttaccgaatcttggttgtcatctgatagggatatcctccgtggata 42673070  T
Q  256 agtctctctttgggacatacatcttgatcctattcttggatccnnnnnnngaccaaaggatccaccatcgctgcttaagcgcctccgtattttatcgagt 355  Q
    |||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  42673069 agtctctctttgggacatacatcttgatcctattcttgcatcctttttttgaccaaaggatccaccatcgctgcttaagcgcctccttattttattgagt 42672970  T

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