View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7875_high_1 (Length: 617)
Name: NF7875_high_1
Description: NF7875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7875_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 30569142 - 30569472
Alignment:
| Q |
1 |
tctttaaattctgatacatgaaatgaaaccaagcgtaagcttttttatgacaaatttcatatttggaatgcnnnnnnntaagtacctggtgacatattcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||||| | |||||||||||| ||||||| |
|
|
| T |
30569142 |
tctttaaattctgatacatgaaatgaaaccaagcataagcttttatatgacaaatttcatatatgaaatgcaaaaaaatgagtacctggtgagatattcc |
30569241 |
T |
|
| Q |
101 |
ttgttctacaaattgctcagaaggaatcattgttgaaacatatataaacaaaagtgaagatgaggtaagttatgaagagaatgatgagatagagaaatat |
200 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30569242 |
ttgttctacaatttgctcagaaggattcattgttgaaacatatata---------gaaaatgaggtaagttatgaagagaatgatgagatagagaaatat |
30569332 |
T |
|
| Q |
201 |
atagaaaatgagtaatggaagaagtgaagtagtaacaaggcaagtggtgctgtgtgtgttcaaagaagttgtaaaatgcattcaatgctcttttaacttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30569333 |
atagaaaatgagtaatggaagaagtgaagtagtaacaaggcaagtgg---tgtgtgtgtccaaagaagttataaaatgcattcaatgctcttttaacttt |
30569429 |
T |
|
| Q |
301 |
attttgtttgatttcattaaccaaactaacaccttccccttac |
343 |
Q |
| |
|
||||||| || |||||||||||| |||||||||||||||||| |
|
|
| T |
30569430 |
cttttgttggacttcattaaccaacctaacaccttccccttac |
30569472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30424577 - 30424509
Alignment:
| Q |
1 |
tctttaaattctgatacatgaaatgaaaccaagcgtaagcttttttatgacaaatttcatatttggaat |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||||||||| |
|
|
| T |
30424577 |
tctttaaattctgatacatgaaatgaaaccaagcataagattttatatgacaaatttaatatttggaat |
30424509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 539
Target Start/End: Original strand, 30569583 - 30569703
Alignment:
| Q |
422 |
aattataagtagtttattgtcatatgtgtaga--tataaataatgatttatgtatt--cagattttaagttttacaaaaataaaaccattctttctttat |
517 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| |||||| ||||||||| |||| ||||||||||||||| ||||||||||| || || | || | |
|
|
| T |
30569583 |
aattataagtaacttattgtcatatgagtagagatataaacgatgatttatatattttcagattttaagtttttaaaaaataaaactgtttttccctt-t |
30569681 |
T |
|
| Q |
518 |
atgtcctttgtgcataagattg |
539 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
30569682 |
atgtcctttgtgcataagattg |
30569703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30528802 - 30528843
Alignment:
| Q |
1 |
tctttaaattctgatacatgaaatgaaaccaagcgtaagctt |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30528802 |
tctttaaattctgatacatgaaatgaaaccaagcataagctt |
30528843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 30569522 - 30569564
Alignment:
| Q |
381 |
ttttccaaaactagtgtacagtgttcaattgaatttggataaa |
423 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
30569522 |
tttttcaaaactaatgtacagtgttgaattgaatttggataaa |
30569564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University