View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7875_low_2 (Length: 588)
Name: NF7875_low_2
Description: NF7875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7875_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 148 - 570
Target Start/End: Complemental strand, 32970704 - 32970277
Alignment:
| Q |
148 |
cccaagtataatcaaaatccccaattacatacaccatcattcccctaactcacaacaagaacatagaaacttaaa-gaattagttatgtacataacaaat |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32970704 |
cccaagtataatcaaaatccccaattacatacaccatcattcccctaactcacaacaagaacatagaaacttaaaagaattagttatgtacataacaaat |
32970605 |
T |
|
| Q |
247 |
gtctcatacttgctcaccaacttatatataatttataaaccatccctccacatgaagctgccactccatgcataggacacttcaagtcttcaaccacctt |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32970604 |
gtctcatacttgctcaccaacttatatataatttataaaccatccctccacatgaagctgccactccatgcataggacacttcaagtctttaaccacctt |
32970505 |
T |
|
| Q |
347 |
atctactagtcttctcatacacacatgattgctaagttacacacgtttgttaattacgttcgcaactactttgtgtgtgagtgtgaattgtgtaaagacc |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32970504 |
atctactagtcttctcatacacacatgattgctaagttacacacgtttgttaattacgttcgcaactactttgtgtgtgagtgtgaattgtgtaaagacc |
32970405 |
T |
|
| Q |
447 |
tcttacttttcgtttattattaagtttcatgtgc----taacttttcgtcttttgtttattaatttctttcttgcaagtgcaatataataagaataattg |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32970404 |
tcttacttttcgtttattattaagtttcatgtgctaattaacttttcgtcttttgtttattaatttctttcttgaaagtgcaatataataagaataattg |
32970305 |
T |
|
| Q |
543 |
catatttttggatttaggaggctacttt |
570 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
32970304 |
catatttttggatttaggaggctacttt |
32970277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 32970823 - 32970700
Alignment:
| Q |
1 |
ataaaagatatggcgaataaatttagcaaataataatagacctttagattaaaaatttgactccacatctgattctaactgtatatatcaaaatatgtat |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32970823 |
ataaaagatatggcgagtaaatttagcaaacaataatagacctttagattaaaaatttgactccacatctgattctaactgtatatatcaaaa----tat |
32970728 |
T |
|
| Q |
101 |
atcagatccccacacctcccaaacccaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
32970727 |
atcagatccccacacctcccaaacccaa |
32970700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University