View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7875_low_3 (Length: 472)
Name: NF7875_low_3
Description: NF7875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7875_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 20 - 470
Target Start/End: Original strand, 39975689 - 39976139
Alignment:
| Q |
20 |
aacttggcttaggattcatcaagnnnnnnntaggatccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccac |
119 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975689 |
aacttggcttaggattcatcaagaaaaaaataggatccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccac |
39975788 |
T |
|
| Q |
120 |
aggcactatctcattagccaactcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcacct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975789 |
aggcactatctcattagccaactcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcacct |
39975888 |
T |
|
| Q |
220 |
tctcttagtaacttttgcattgtttcaccatcttgttttctgtctcttgttaatctcactgtttttattggtgctatgaactcagaaactttgcttaaac |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975889 |
tctcttagtaacttttgcattgtttcaccatcttgttttctgtctcttgttaatctcactgtttttattggtgctatgaactcagaaactttgcttaaac |
39975988 |
T |
|
| Q |
320 |
tatatgttactgcagttaatggctttgctaatgatgtgcttaagaaaacaggatccaacaatgtcctatgtgtgcatacaaacaaaacacctttgtttgg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975989 |
tatatgttactgcagttaatggctttgctaatgatgtgcttaagaaaacaggatccaacaatgtcctatgtgtgcatacaaacaaaacacctttgtttgg |
39976088 |
T |
|
| Q |
420 |
ttttgnnnnnnnagggatagtgcctttgatttttagatctctgctactcca |
470 |
Q |
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| T |
39976089 |
ttttgtttttttagggatagtgcctttgatttttagatctatgccactcca |
39976139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 25552899 - 25552961
Alignment:
| Q |
141 |
ctcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggaca |
203 |
Q |
| |
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| T |
25552899 |
ctcagcaaacaaaggactaaaccttagcaagtaaggttctctacaagttgttccttctggaca |
25552961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 55 - 277
Target Start/End: Original strand, 16147502 - 16147724
Alignment:
| Q |
55 |
tccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccacaggcactatctcattagccaactcagcaaacaatg |
154 |
Q |
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|||||||| || ||||| || ||||| || ||||||||||| || |||| | |||||| ||||| || || ||||||| ||| | |||||||| | || |
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| T |
16147502 |
tccaaacattttaatccactagctgttgtaccataaaacatactcacattaacattcatagccactggaacaatctcatcagcaagttcagcaaaaagtg |
16147601 |
T |
|
| Q |
155 |
aactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcaccttctcttagtaacttttgcattgtttcaccatcttg |
254 |
Q |
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|
||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| | |||||| |
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| T |
16147602 |
aactaaaccttaataaataaggttccctacaagttgttccttcaggacaaacaactaaatcaccttcacttaacaacctttgcattgtttccctatcttg |
16147701 |
T |
|
| Q |
255 |
ttttctgtctcttgttaatctca |
277 |
Q |
| |
|
|| ||| || |||||||| |||| |
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|
| T |
16147702 |
ttctctatcccttgttaaactca |
16147724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 55 - 269
Target Start/End: Complemental strand, 16195433 - 16195219
Alignment:
| Q |
55 |
tccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccacaggcactatctcattagccaactcagcaaacaatg |
154 |
Q |
| |
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|||||||| || ||||| || ||||| || ||||||||||| || |||| | |||||| ||||| || || ||||||| ||| | |||||||| | || |
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| T |
16195433 |
tccaaacattttaatccactagctgttgtaccataaaacatactcacattatcattcatagccactggaacaatctcatcagcaatttcagcaaaaagtg |
16195334 |
T |
|
| Q |
155 |
aactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcaccttctcttagtaacttttgcattgtttcaccatcttg |
254 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||| |||||||||||||| || ||||||||||||||||| || || ||| ||||||||||||| | |||||| |
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| T |
16195333 |
aactaaaccttaataaataaggttccctacaagttgttccttcagggcacacaactaaatcaccttccctaagcaacctttgcattgtttccctatcttg |
16195234 |
T |
|
| Q |
255 |
ttttctgtctcttgt |
269 |
Q |
| |
|
|| |||||||||||| |
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| T |
16195233 |
ttctctgtctcttgt |
16195219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 28538651 - 28538583
Alignment:
| Q |
353 |
atgtgcttaagaaaacaggatccaacaatgtcctatgtgtgcatacaaacaaaacacctttgtttggtt |
421 |
Q |
| |
|
||||||||| |||||| |||||||| | ||||||||||||||||||||| | ||| |||||||| |||| |
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| T |
28538651 |
atgtgcttaggaaaactggatccaaaagtgtcctatgtgtgcatacaaagataactcctttgttaggtt |
28538583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 50133706 - 50133656
Alignment:
| Q |
232 |
ttttgcattgtttcaccatcttgttttctgtctcttgttaatctcactgtt |
282 |
Q |
| |
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|||||||||||||||||||||| ||||||| | ||| |||||||||||||| |
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| T |
50133706 |
ttttgcattgtttcaccatcttattttctgccccttattaatctcactgtt |
50133656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 38792285 - 38792363
Alignment:
| Q |
142 |
tcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcacctt |
220 |
Q |
| |
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|||| |||||| || ||||||||||| ||||| ||||||||||| || || ||||| ||||| ||||||| ||| |||| |
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| T |
38792285 |
tcagaaaacaaagagctaaaccttaataaataaggttctctacaagtggtcccttctggacacacaactacatcccctt |
38792363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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