View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7875_low_4 (Length: 248)
Name: NF7875_low_4
Description: NF7875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7875_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 41830338 - 41830104
Alignment:
| Q |
1 |
acaatatgcttagtaactgcaatattattgaaagcaataataatgaaattgaaagtaggggtg---tagtggagaatttatttcaagaacaattcaactt |
97 |
Q |
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| T |
41830338 |
acaatatgcttagtaactgcaatattattgaaagcaataataataaaattgaaagtaggggtgaagtagtggagaatttatttcaagaacaattcaactt |
41830239 |
T |
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| Q |
98 |
gggagaatgggattttgaggagttgatgaaagatgtttcctcctttttattttcttgatttttcattctgatccaataatatttgtgttcctacggctat |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41830238 |
gggagaatgggattttgaggagttgatgaaagatgtttcctcctttttattttcttgatttttcattctgatccaataatatttgtgttcctacggctat |
41830139 |
T |
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| Q |
198 |
atcatt-ttttccctcaatttctcctaattggggt |
231 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
41830138 |
atcatttttttccctcaatttctcctaattggggt |
41830104 |
T |
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