View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7876_high_3 (Length: 443)

Name: NF7876_high_3
Description: NF7876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7876_high_3
NF7876_high_3
[»] chr6 (1 HSPs)
chr6 (64-443)||(31785947-31786329)


Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 64 - 443
Target Start/End: Complemental strand, 31786329 - 31785947
Alignment:
Q  64 catgaacaaaagtaaataagatctatatttccaagtatattaagcacacttagaaaaatatgagtataaa--atgaaaaattatcactagaa-gatcaaa 160  Q
    |||||||||||||||||||||||||| ||| |||||||||||| | |||||| |||||||||||||||||  |||||||||||||||||||| |||||||    
T  31786329 catgaacaaaagtaaataagatctatcttttcaagtatattaaacccacttacaaaaatatgagtataaattatgaaaaattatcactagaatgatcaaa 31786230  T
Q  161 attacaaaatttagtgttattctaatgatttaaaagtggcaatttgttgtgtattgaactctatggttgagggcaggcatttctctctttgtttctatca 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31786229 attacaaaatttagtgttattctaatgatttaaaagtggcaatttgttgtgtattgaactctatgattgagggcaggcatttctctctttgtttctatca 31786130  T
Q  261 atccaaacatatttctttcaattggcttttgggggctagtgcttggtttctgttcttctatattttcagcattgttttcactcaaatcttgtatgtccaa 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31786129 atccaaacatatttctttcaattggcttttgggggctagtgcttggtttctgttcttctatattttcagcattgttttcactcaaatcttgtatgtccaa 31786030  T
Q  361 tatctcaactcttcgatttgttttcttttttatcttgattgcaacatcttgagggatgaaactgccacacacaattaccctgg 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31786029 tatctcaactcttcgatttgttttcttttttatcttgattgcaacatcttgagggatgaaactgccacacacaattaccctgg 31785947  T

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