View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7876_high_4 (Length: 406)

Name: NF7876_high_4
Description: NF7876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7876_high_4
NF7876_high_4
[»] chr6 (8 HSPs)
chr6 (1-93)||(26812106-26812198)
chr6 (1-93)||(26618218-26618310)
chr6 (1-93)||(26724146-26724238)
chr6 (163-280)||(28242307-28242426)
chr6 (203-280)||(25105429-25105506)
chr6 (171-239)||(27671388-27671458)
chr6 (202-239)||(27672348-27672385)
chr6 (10-74)||(27664733-27664797)
[»] chr1 (1 HSPs)
chr1 (1-85)||(26136469-26136553)
[»] scaffold0038 (1 HSPs)
scaffold0038 (163-280)||(42469-42588)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 26812106 - 26812198
Alignment:
Q  1 gaatatgagtttattaaagagatagttacagagatttccaacaagatcaaccgtggtcttttagaagttgctgatcaccctgttgtgggactt 93  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26812106 gaatatgagtttattaagaagatagttacagagatttccaaaaagatcaaccgtggtcttttagaagttgctgatcaccctattgtgggactt 26812198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 26618218 - 26618310
Alignment:
Q  1 gaatatgagtttattaaagagatagttacagagatttccaacaagatcaaccgtggtcttttagaagttgctgatcaccctgttgtgggactt 93  Q
    ||||| |||||||||||  ||||||||||||||||||  |||||||||||  |||||||||||||||||||||||||||  ||||| ||||||    
T  26618218 gaatacgagtttattaagaagatagttacagagatttggaacaagatcaattgtggtcttttagaagttgctgatcacctagttgttggactt 26618310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 26724146 - 26724238
Alignment:
Q  1 gaatatgagtttattaaagagatagttacagagatttccaacaagatcaaccgtggtcttttagaagttgctgatcaccctgttgtgggactt 93  Q
    ||||| |||||||||||  ||||||||||||||||||  |||||||||||  |||||||||||||||||||||||||||  ||||| ||||||    
T  26724146 gaatacgagtttattaagaagatagttacagagatttggaacaagatcaattgtggtcttttagaagttgctgatcacctagttgttggactt 26724238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 280
Target Start/End: Complemental strand, 28242426 - 28242307
Alignment:
Q  163 gaaatatcagtttggtagatgagattaaatatcggaa--atttttgaggtccaaacaaaatatcacttaaacgctcaatttatttttaagatcccgcctg 260  Q
    ||||| |||||||||||||||||||||||||||| ||  | |||||||||| ||||||||||| |||||| |  |||||| ||||||| | ||||  |||    
T  28242426 gaaatgtcagtttggtagatgagattaaatatcgtaaagacttttgaggtctaaacaaaatattacttaagctttcaattcatttttagggtcccatctg 28242327  T
Q  261 aaaatttcagtttgattttt 280  Q
    ||||| ||| ||||| ||||    
T  28242326 aaaatgtcaatttgactttt 28242307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 25105429 - 25105506
Alignment:
Q  203 tttgaggtccaaacaaaatatcacttaaacgctcaatttatttttaagatcccgcctgaaaatttcagtttgattttt 280  Q
    |||||||||||||||||||||||||||| | ||||||| ||||||| | |||| | ||  ||| ||||||||||||||    
T  25105429 tttgaggtccaaacaaaatatcacttaagctctcaattcatttttagggtcccacttgggaatgtcagtttgattttt 25105506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 27671458 - 27671388
Alignment:
Q  171 agtttggtagatgagattaaatatcggaaat--ttttgaggtccaaacaaaatatcacttaaacgctcaat 239  Q
    ||||||||||||| ||||||||||| ||||   ||||||| ||||||||||||||||||||| | ||||||    
T  27671458 agtttggtagatgtgattaaatatcagaaagacttttgagatccaaacaaaatatcacttaagctctcaat 27671388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 27672385 - 27672348
Alignment:
Q  202 ttttgaggtccaaacaaaatatcacttaaacgctcaat 239  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  27672385 ttttgaggtccatacaaaatatcacttaaactctcaat 27672348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 27664797 - 27664733
Alignment:
Q  10 tttattaaagagatagttacagagatttccaacaagatcaaccgtggtcttttagaagttgctga 74  Q
    |||||| |||| |||||||||||  | |||||||||||||||||| ||| |||| | ||||||||    
T  27664797 tttattgaagaaatagttacagacgtctccaacaagatcaaccgttgtcatttacatgttgctga 27664733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 26136469 - 26136553
Alignment:
Q  1 gaatatgagtttattaaagagatagttacagagatttccaacaagatcaaccgtggtcttttagaagttgctgatcaccctgttg 85  Q
    |||||||||||||||||  |||||||||||| |||||| |||||||||||||||| ||||||| | ||||| |||||||| ||||    
T  26136469 gaatatgagtttattaagaagatagttacagtgatttcaaacaagatcaaccgtgttcttttacatgttgccgatcaccccgttg 26136553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 280
Target Start/End: Complemental strand, 42588 - 42469
Alignment:
Q  163 gaaatatcagtttggtagatgagattaaatatcggaa--atttttgaggtccaaacaaaatatcacttaaacgctcaatttatttttaagatcccgcctg 260  Q
    ||||| |||||||||||||||||||||||||||| ||  | |||||||||| ||||||||||| |||||| |  |||||| ||||||| | ||||  |||    
T  42588 gaaatgtcagtttggtagatgagattaaatatcgtaaagacttttgaggtctaaacaaaatattacttaagctttcaattcatttttagggtcccatctg 42489  T
Q  261 aaaatttcagtttgattttt 280  Q
    ||||| ||| ||||| ||||    
T  42488 aaaatgtcaatttgactttt 42469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University