View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7876_low_1 (Length: 754)
Name: NF7876_low_1
Description: NF7876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7876_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 6 - 485
Target Start/End: Original strand, 43774187 - 43774672
Alignment:
| Q |
6 |
tcgagtgagaagaaaaccaccgggtgtgttggttccacgacgatgtcaatgtacttaagtagttctttatgtttctcttctatcaaagcagcagttatat |
105 |
Q |
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| T |
43774187 |
tcgagagaaaagaaaaccaccgggtgtgttggttccacgacgatgtcaatgtacttaagtagttctttatgtttctcttctatcaaagcagcagttatat |
43774286 |
T |
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| Q |
106 |
gtgttaatatatggttcagcagttctttatttttatgccttttgcttgaaaatttgataatacctgtgatattgctctttacatctcgcctcaaaagttg |
205 |
Q |
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| T |
43774287 |
gtgttaatatatggttcagcagttctttatttttatgcctcttacttgaaaatttgataatacctgtgatattgctctttacatctcgtctcaaaagttg |
43774386 |
T |
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| Q |
206 |
gatatgcttctagattaaaaccatcacttgctagtttttcaatataatatttgcttgtaatattaaagtttcatagcaatgtgttcatcatggtttcact |
305 |
Q |
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| T |
43774387 |
gatatgcttctagattaaaaccatcacttgctagtttttcaatataatatttgcttgttatattaaagcttcatagcaatgtgttcatcatggtttcact |
43774486 |
T |
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| Q |
306 |
tttcgtcatattatttcacacacaccaggaaattttaatcatatatgtaatctgggctaaaa---ttcttgactaaatttactgaaaaatctgttttggg |
402 |
Q |
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| T |
43774487 |
tttcgtcatattatttcacacacaccaggaaattttaatcatatatgtaatctgggctaaaattcttcttgactaaatttactgaaaaatctgttttggg |
43774586 |
T |
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| Q |
403 |
aagcatacattggtttcatgttataagtgtgtggttttcctttgagaaccaataacaagaggc---acatttcatgccgcatacat |
485 |
Q |
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| T |
43774587 |
aagcatacattggtttcatgttataagtgtgtggttttcctttgagaaccaataaccagaggcccaacatttcatgccgcatacat |
43774672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 624 - 737
Target Start/End: Original strand, 43774671 - 43774784
Alignment:
| Q |
624 |
atttgatggagaaatgtctaatcttgtaatnnnnnnnnttagttattgttttttcatgttaaagactgtggatctagattttctgactagtatgaaaaac |
723 |
Q |
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| T |
43774671 |
atttgatggagagatgtctaatcttgtaataaaaaaaattagttattgttttttcatgttaaagactgtggatctagattttctgactagtatgaaaaac |
43774770 |
T |
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| Q |
724 |
ctagagcatgatat |
737 |
Q |
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| T |
43774771 |
ctagagcatgatat |
43774784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 420 - 465
Target Start/End: Original strand, 43773180 - 43773224
Alignment:
| Q |
420 |
atgttataagtgtgtggttttcctttgagaaccaataacaagaggc |
465 |
Q |
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| T |
43773180 |
atgttataagtgtgtggttt-cttttgagaaccaataacaagaggc |
43773224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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