View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7876_low_7 (Length: 350)
Name: NF7876_low_7
Description: NF7876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7876_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 43163605 - 43163905
Alignment:
| Q |
1 |
atggtgctaactatcagcagttgctaatgtgaacattatatgctgagttgcatttccttgttgcatcatgttttgcgaaatgtgggagatgttcatttga |
100 |
Q |
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| T |
43163605 |
atggtgctaactatcagcagttgctaatgtgaacattatatgctgagttgcatttccttgttgcatcatgttttgcgaaatgtgggagatgttcatttga |
43163704 |
T |
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| Q |
101 |
tgtcctgtaattgtttttgctactaaaacatacattctggatttccggtgaatgatattggaacgcttgttgttgtatgtagcgaacaaaaacatcacgt |
200 |
Q |
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| T |
43163705 |
tgtcctgtaattgtttttgctactaaaacatacattctggatttccagtgaatgataatggaacgattgttgttgtatgtagcgaacaaaaacatcactt |
43163804 |
T |
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| Q |
201 |
agatgcatgaactattaacaattgttagatcttgcgtttgtaggaaaacatgggtggattaaaataagaaggatcac--tacagtgagatacttcccaat |
298 |
Q |
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| T |
43163805 |
agatgcatgaactattaacaattgttagatcttgcgtttgtaggaaaacatgggtggattaaaataagaaggatcactatatagtgagatacttcccaat |
43163904 |
T |
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| Q |
299 |
g |
299 |
Q |
| |
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| T |
43163905 |
g |
43163905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 269
Target Start/End: Original strand, 51466647 - 51466770
Alignment:
| Q |
147 |
ggtgaatgatattggaacgcttgttgttgtatgtagcgaacaaaaacatcacgtagatgcatgaactattaa-caattgttagatcttgcgtttgtagga |
245 |
Q |
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| T |
51466647 |
ggtgaattatattggaacaagtgttgctatatgtggtgaacaaaaatatcacgaagatgaactaactaataggcaatagttagatcttgcatttggagga |
51466746 |
T |
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| Q |
246 |
aaacatgggtggattaaaataaga |
269 |
Q |
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| T |
51466747 |
aaacatgggtggataaaaataaga |
51466770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 51464610 - 51464662
Alignment:
| Q |
55 |
tccttgttgcatcatgttttgcgaaatgtgggagatgttcatttgatgtcctg |
107 |
Q |
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| T |
51464610 |
tccttgttgcagcatgttttacataatgtgggaaatgttcatttgatgtcctg |
51464662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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