View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7876_low_9 (Length: 274)
Name: NF7876_low_9
Description: NF7876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7876_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 43443541 - 43443791
Alignment:
| Q |
11 |
agaatatattatcaaccattggattcaaaatgaagggctaagattaaaacactccactaaagtaatcatgtgaccaattttcacatactctctcctaact |
110 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43443541 |
agaatatattatcaaccactggattcaaaatgaagggctaagattaaaacactccgctaaagtaatcatgtgaccaattttcacatactctctcgtaact |
43443640 |
T |
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| Q |
111 |
gttcaactatccagcaccaccaccgcttcatctttccagcagctatcactgattcaccattgatgatgcatacgtgaacaaacctgctaccctcttttat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43443641 |
gttcaactatccagcaccaccaccgcttcatctttccagcagctatcactgattcaccattgatgatgcatacgtaaacaaacctgctaccctcttttat |
43443740 |
T |
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| Q |
211 |
gataccatcaatcatttgctcatctacataatggtggatttgttctttatg |
261 |
Q |
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| T |
43443741 |
gataccatcaatcatttgctcatctacataatggtggatttgttctttatg |
43443791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 45223810 - 45224062
Alignment:
| Q |
11 |
agaatatattatcaaccattggattcaaaatgaagggctaagattaaaacactccactaaagtaatcatgtgaccaattttcacatactctctcctaact |
110 |
Q |
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|||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
45223810 |
agaacatattatcaatcaccggattcaaaatgaagggctaagattaaaacactccactaaagtaatcatgcgaccaattttcacatactctctcgtaact |
45223909 |
T |
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| Q |
111 |
gttcaactatccagcaccaccaccgcttcatctttccagcagctatcactgattcaccattgatgatgcatacgtgaacaaacctgctaccctcttttat |
210 |
Q |
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| T |
45223910 |
gttcaactatccagcaccaccaccgcttcatctttccaacacctatcaccgattcaccattgacgatgcaaacgtgaaccaacctgctaccctcttttat |
45224009 |
T |
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| Q |
211 |
gataccatcaatcatttgctcatctaca---taatggtggatttgttctttat |
260 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45224010 |
gataccatcaatcatttgctcatctacatattaatggtggatttgttctttat |
45224062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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