View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7877_high_1 (Length: 428)
Name: NF7877_high_1
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7877_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 13 - 413
Target Start/End: Original strand, 42215062 - 42215462
Alignment:
| Q |
13 |
aatatcagatctgtaaataaaaatttcactgtctacattgaaaatttatgtatgtttcaaatcacagtagcgtcatagtcgttgatattgccaaatctag |
112 |
Q |
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| T |
42215062 |
aatatcagatctgtaaataaaaatttcactgtctacattgaaaatttatgtatgtttcaaatcacagtagcgtcatagtcgttgatattgtcaaatctag |
42215161 |
T |
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| Q |
113 |
ctgatatggccctaactgcatatgccttgtggtcgcagacattaaaagtcataaaacatgtaaccacaatcgcagtcctggactgtttttcgaaacataa |
212 |
Q |
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| T |
42215162 |
ctgatatggccctaactgcatatgccttgtggtcgcagacattaaaagtcataaaacatgtgaccacaatcgcagtcctggactgtttttcgaaacataa |
42215261 |
T |
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| Q |
213 |
atttaactaccactcaatattgtatttttattaataataagagatgttattcatattgagccattgattatagatgaaggatttgccttaccagtggtca |
312 |
Q |
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| T |
42215262 |
atttaactaccactcaatattgtatttttattaataataagagatgttattcatattgagccattgattatagatgacggatttgccttaccagtggtca |
42215361 |
T |
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| Q |
313 |
tgagggcagatttaattgcagcaggactccagtcagggtgaaaggatttaacataagcagcagccgcaatggcatgtggacatgccattgatgttcctga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215362 |
tgagggcagatttaattgcagcaggactccagtcagggtgaaaggatttaacataagcagcagccgcaatggcatgtggacatgccattgatgttcctga |
42215461 |
T |
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| Q |
413 |
t |
413 |
Q |
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| T |
42215462 |
t |
42215462 |
T |
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