View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7877_high_14 (Length: 265)
Name: NF7877_high_14
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7877_high_14 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 11183661 - 11183415
Alignment:
| Q |
19 |
gtttcagagtgaccaagaattgttttccacaactggtgctgataccattgccattgtcaatagctttagcagcaatcaaactcttttctttgaagctttt |
118 |
Q |
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| T |
11183661 |
gtttcagagtgaccaagaattgttttccacacctggtgctgataccattgccattgttaatagctttagcagcaatcaaactcttttctttgaagctttt |
11183562 |
T |
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| Q |
119 |
aaggcctcgatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaactttgttaatactgttagtcttgcta |
218 |
Q |
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| T |
11183561 |
aaggcctccatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaactttgttaatactgttagtcttgcta |
11183462 |
T |
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| Q |
219 |
ccaaagtcaccaaagattcatcagaagatggtattgttagctcatac |
265 |
Q |
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| T |
11183461 |
ccaaagtcaccaaagattcagcagaagatggtattgttagctcatac |
11183415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 11190885 - 11190641
Alignment:
| Q |
19 |
gtttcagagtgaccaagaattgttttccacaactggtgctgataccattgccattgtcaatagctttagcagcaatcaaactcttttctttgaagctttt |
118 |
Q |
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| T |
11190885 |
gtttcagagtgatcaagagcttttttccacacctggtgctgataccattgccattgttaatagctttagcagcaatcaaactcttttctttgaagctttt |
11190786 |
T |
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| Q |
119 |
aaggcctcgatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaactttgttaatactgttagtcttgcta |
218 |
Q |
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| T |
11190785 |
aaggcctccatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaactttgttaatactgttagtcttgcta |
11190686 |
T |
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| Q |
219 |
ccaaagtcaccaaagattcatcagaagatggtattgttagctcat |
263 |
Q |
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| T |
11190685 |
ccaaagtcaccaaagattcatcagaagatggtattgttagctcat |
11190641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 11172898 - 11173147
Alignment:
| Q |
19 |
gtttcagagtgaccaagaattgttttccacaactggtgctgataccattgccattgtcaatagctttagcagcaatcaaactcttttctttgaagctttt |
118 |
Q |
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| T |
11172898 |
gtttcagagtgaccaagtattgtcttccacaagtggcgcggacacgattgccattgtcaacagtttcaacaacaaccaaactcttttctttgaagctttt |
11172997 |
T |
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| Q |
119 |
aaggcctcgatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaactttgttaat---actgttagtcttg |
215 |
Q |
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| T |
11172998 |
aaggcctcgatgattaaaatgagtagaattaaagtgttaactggatctcaaggtgaaattagaaaacaatgtaactttgttaatggaaattctggccttg |
11173097 |
T |
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| Q |
216 |
ctaccaaagtcaccaaagattcatcagaagatggtattgttagctcatac |
265 |
Q |
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| T |
11173098 |
ccacaaaagtcacaagagagtcgtcagaggatggtattgttagctcatac |
11173147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 11179000 - 11179173
Alignment:
| Q |
19 |
gtttcagagtgaccaagaattgttttccacaactggtgctgataccattgccattgtcaatagctttagcagcaatcaaactcttttctttgaagctttt |
118 |
Q |
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|||||| ||||||||||| | |||||||||| |||| |||| || ||| | ||||||||||| || || ||||||||||| ||||||||| |||| |
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| T |
11179000 |
gtttcaaagtgaccaagagcttttttccacaaatggttctgacactatttctattgtcaatagtttcgccaataatcaaactctcttctttgaaaatttt |
11179099 |
T |
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| Q |
119 |
aaggcctcgatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaa |
192 |
Q |
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| T |
11179100 |
gttgcttcaatgataaaaatgggtaatattggagttttaactggatctcaaggtgaaattagaacacaatgtaa |
11179173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 11097927 - 11098016
Alignment:
| Q |
59 |
gataccattgccattgtcaatagctttagcagcaatcaaactcttttctttgaagcttttaaggcctcgatgattaagatgggtaatatt |
148 |
Q |
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| T |
11097927 |
gataccattgctattgttaatagctttagtagcaaccaagctctcttctttgagaattttagggtgtccatgattaaaatggctaatatt |
11098016 |
T |
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