View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7877_high_18 (Length: 251)

Name: NF7877_high_18
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7877_high_18
NF7877_high_18
[»] chr7 (7 HSPs)
chr7 (11-251)||(25064064-25064304)
chr7 (55-223)||(25085492-25085664)
chr7 (55-158)||(25091386-25091489)
chr7 (36-158)||(25073824-25073946)
chr7 (176-250)||(25074029-25074103)
chr7 (56-146)||(25059322-25059412)
chr7 (176-251)||(25091574-25091649)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 25064064 - 25064304
Alignment:
Q  11 aatacttgaagaactgcaattaagttgccttcaacatgcatatgttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattcca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25064064 aatacttgaagaactgcaattaagttgccttcaacatgcatatgttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattcca 25064163  T
Q  111 agcagcatatcccctcaaaactatatcagcctacatcaaatcaatgttaggttttccnnnnnnnnttgtgagagtgatataagttttataatttctaata 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||| ||||||||||||||||||||||||||||    
T  25064164 agcagcatatcccctcaaaactatatcagcctacatcaaatcaatgttaggttttccaaaaaaaattgtgacagtgatataagttttataatttctaata 25064263  T
Q  211 tttgcctatatatgtgattatctaaactcttatttttcata 251  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25064264 tttgcctatatatgtgattatctaaactcttatttttcata 25064304  T

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Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 55 - 223
Target Start/End: Original strand, 25085492 - 25085664
Alignment:
Q  55 ttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcccctcaaaactatatcagcctacatcaaatcaa 154  Q
    ||||||||||||||||| ||| ||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  25085492 ttcaataccttaggaaatattttatccaaaacttgcagagcacgccttgaattccaagcagcatatccccgcaaaactatatcagcctacattaaatcaa 25085591  T
Q  155 tgttaggttttccnnnnnnnnttgtgagagtgatataag-----ttttataatttctaatatttgcctatatat 223  Q
    |||||||| ||||        ||||||||||||||||||     ||||||||||||||||| |||| |||||||    
T  25085592 tgttaggtcttcc-aaaaaatttgtgagagtgatataagtttaattttataatttctaataattgcatatatat 25085664  T

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Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 25091386 - 25091489
Alignment:
Q  55 ttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcccctcaaaactatatcagcctacatcaaatcaa 154  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25091386 ttcaataccttgggaaatattttatccaaaacttggagagcatgccttgaagtccaagcagcatatcccctcaaaactatatcagcctacatcaaatcaa 25091485  T
Q  155 tgtt 158  Q
    ||||    
T  25091486 tgtt 25091489  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 158
Target Start/End: Original strand, 25073824 - 25073946
Alignment:
Q  36 tgccttcaacatgcatatgttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcccctcaaaactata 135  Q
    |||||||||||  |||||   ||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||  |||| ||||    
T  25073824 tgccttcaacaatcatatacacaataccttggaaaatattttatccaaaacttggagagcatgccttgaattccaaccagcatatccccgtaaaagtata 25073923  T
Q  136 tcagcctacatcaaatcaatgtt 158  Q
    ||||||| | ||||| |||||||    
T  25073924 tcagcctgcgtcaaaccaatgtt 25073946  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 25074029 - 25074103
Alignment:
Q  176 ttgtgagagtgatataagttttataatttctaatatttgcctatatatgtgattatctaaactcttatttttcat 250  Q
    |||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  25074029 ttgtgatagtgatataagttttaaaatttctaatatttgccaatatatgtgattatctaaaatcttatttttcat 25074103  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 25059322 - 25059412
Alignment:
Q  56 tcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcccctcaaaactatatcagcctacat 146  Q
    |||||||||||||||||||   ||||| |||||| ||| || || ||||||||||| |||||||||||| ||||||||||||| |||||||    
T  25059322 tcaataccttaggaaaaatatcatccacaacttgtagaccacgcgttgaattccaaccagcatatccccgcaaaactatatcaacctacat 25059412  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 25091574 - 25091649
Alignment:
Q  176 ttgtgagagtgatataagttttataatttctaatatttgcctatatatgtgattatctaaactcttatttttcata 251  Q
    |||||| |||||||||||||||| ||| |||||||||| || ||||||||||| ||||||| ||| ||||||||||    
T  25091574 ttgtgatagtgatataagttttaaaatgtctaatattttccaatatatgtgatcatctaaaatctcatttttcata 25091649  T

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