View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7877_high_2 (Length: 506)
Name: NF7877_high_2
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7877_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Complemental strand, 40538830 - 40538352
Alignment:
| Q |
19 |
ccgttcccccagtaaagtagcgttgggtgtactcttaaagtcccacattgtttggaaatcgatgtcaagtttagttttgtacaactcctcaatctaatga |
118 |
Q |
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| T |
40538830 |
ccgttcccccagtaaagtagcgttggatgtattcttaaagttccgcattgtttggaaatcgatgtcaagtttagttgtgtacaactcctcaatctaatga |
40538731 |
T |
|
| Q |
119 |
gatgtcttttataaaagataaatcgtaaaaaatttagattcaaaacagacaatacctcaaaacgtcggttagacatgtgagtatagaataaattgggctt |
218 |
Q |
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|||| ||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
40538730 |
gatgccttttataaaagacaaattgtaaaaaatttaaattcaaaacagacaatacctcaaaacaacggttagacatgtgagtataaaataaattgggctt |
40538631 |
T |
|
| Q |
219 |
tgtaatgcatgag---tactgtaacttatttatttggtacaactcattgttagctcagtgtcaagaggttagtattataacctcatgatacttagtccat |
315 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40538630 |
tgtaatgcatgaggagtactgtaacttatttatttggtacaactcattgttagctcagtgtcaagaggttagtattataacctcatgatacttagtccat |
40538531 |
T |
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| Q |
316 |
gaatctttggaccattgtaaatggtaattagtgtcattttatgccactttatccaatataaaaagccgttttattcgttaacatgcttttataatata-t |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
40538530 |
gaatctttggaccattgtaaatggtaattagtgtcattttatgccactttatccaatataaaaagccgttttattcgttagcatgcttttataatatatt |
40538431 |
T |
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| Q |
415 |
ttataaataatttatggatctcagccatgatcatcacaaaaatgcttcatggataagtaaactgtatacgtacttccct |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40538430 |
ttataaataatttatggatctcagccatgatcatcacaaaaatgcttcatggataagtaaactgtatacgtacttccct |
40538352 |
T |
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