View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7877_high_20 (Length: 246)
Name: NF7877_high_20
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7877_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 17001868 - 17001645
Alignment:
| Q |
20 |
aatgttgctagttcatatcttatgtaaatgcctttcatgatgtattttattttttatttgtttaatgacccctggaggccctgacaagaggtctaagaat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17001868 |
aatgttgctagttcatatcttatgtaaatgcctttcatgatgtatttgattttttatttgtttaatgacctctggaggccctgacaagaggtctaagaat |
17001769 |
T |
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| Q |
120 |
aactttgtattgagtgttttaaacaacaaggcttaattgttgcaattacgcattgttctcggtttttaatcataagataagatgagcttcaatatagttt |
219 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17001768 |
aactttgtattgagtgttttaaacaacagggctttattgttgcgattacgcattgttctcggtttttaatcataagataagatgagcttcaatatatttt |
17001669 |
T |
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| Q |
220 |
gtgcaggttctgctcatagtatgt |
243 |
Q |
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|||||||||||||||||||||||| |
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| T |
17001668 |
gtgcaggttctgctcatagtatgt |
17001645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 1186928 - 1186705
Alignment:
| Q |
20 |
aatgttgctagttcatatcttatgtaaatgcctttcatgatgtattttattttttatttgtttaatgacccctggaggccctgacaagaggtctaagaat |
119 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1186928 |
aatgttgctagttcatatctttcgtaaatgcctttcatgatgtatttgattttttatttgtttaatgacctctggaggccctgacaagaggtctaagaat |
1186829 |
T |
|
| Q |
120 |
aactttgtattgagtgttttaaacaacaaggcttaattgttgcaattacgcattgttctcggtttttaatcataagataagatgagcttcaatatagttt |
219 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1186828 |
aactttgtattgagtgttttaatcaacaaggctttattgttgcgattacgcattgttctcggtttttaatcataagataagatgagcttcaatatagttt |
1186729 |
T |
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| Q |
220 |
gtgcaggttctgctcatagtatgt |
243 |
Q |
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|||||||||||||||||||||||| |
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| T |
1186728 |
gtgcaggttctgctcatagtatgt |
1186705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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