View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7877_high_22 (Length: 243)
Name: NF7877_high_22
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7877_high_22 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 25064646 - 25064418
Alignment:
| Q |
15 |
ataaagaaggttcttccattgcagagttggggagcaacaacgaggcctaaatttgtgttgtttggttcatcaattgttcaatacagttactatgaaggtt |
114 |
Q |
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| T |
25064646 |
ataaagaaggttcttccattgcacagttggggagcaacaatgaggcctaaatttgtgttgtttggttcatcaattgttcaatacagttactatgaaggtt |
25064547 |
T |
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| Q |
115 |
ggggagctacactttctcacttgtacgctcgtaaggtattattatttcttcctctgactattaataccgtaacgttttattggttatgtgcattttcgaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25064546 |
ggggagctacactttctcacttgtacgctcgtaaggtattattatttcttcctctgactattaataccgtaacgttttattggttatgtacattttcgaa |
25064447 |
T |
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| Q |
215 |
ataaaagagtctagtgaccaagatcacac |
243 |
Q |
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| T |
25064446 |
ataaaagagtctagtgaccaagatcacac |
25064418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 25086079 - 25085863
Alignment:
| Q |
15 |
ataaagaaggttcttccattgcagagttggggagcaacaacgaggcctaaatttgtgttgtttggttcatcaattgttcaatacagttactatgaaggtt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25086079 |
ataaagaaggttcttccattgcagagttggggagcaacaacgaggcctaaatttgtgttgtttggttcatcaattgttcaatacagttactatgaaggtt |
25085980 |
T |
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| Q |
115 |
ggggagctacactttctcacttgtacgctcgtaaggtattattatttcttcctctgactattaataccgtaacgttttattggttatgtgcattttcgaa |
214 |
Q |
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| T |
25085979 |
ggggagctacactttctcacttgtacgctcgtaaggtattattatttcttcctctgactatcaataccgtaaagtttaattggttatgtacattttcgaa |
25085880 |
T |
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| Q |
215 |
ataaaagagtctagtga |
231 |
Q |
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| T |
25085879 |
ataaaagagtctagtga |
25085863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 49 - 169
Target Start/End: Complemental strand, 25074398 - 25074278
Alignment:
| Q |
49 |
caacaacgaggcctaaatttgtgttgtttggttcatcaattgttcaatacagttactatgaaggttggggagctacactttctcacttgtacgctcgtaa |
148 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || |
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| T |
25074398 |
caacaatgaggcctaaatttgtgttgtttggttcttcaattgttcaatacagttactatgaaggttggggagctactctttctcacttgtatgctcgcaa |
25074299 |
T |
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| Q |
149 |
ggtattattatttcttcctct |
169 |
Q |
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| T |
25074298 |
ggtattattatttcttcctct |
25074278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 25091925 - 25091829
Alignment:
| Q |
56 |
gaggcctaaatttgtgttgtttggttcatcaattgttcaatacagttactatgaaggttggggagctacactttctcacttgtacgctcgtaaggta |
152 |
Q |
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| T |
25091925 |
gaggcctaaatttgtgttgtttggttcttcaattgttcaacacagttactatcaaggttggggagctactcttactcacttgtatgctcgtaaggta |
25091829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 25060891 - 25060775
Alignment:
| Q |
56 |
gaggcctaaatttgtgttgtttggttcatcaattgttcaatacagttacta---tgaaggttggggagctacactttctcacttgtacgctcgtaaggta |
152 |
Q |
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| T |
25060891 |
gaggcctaaatttgtgttgtttggttcttccattgttcaatacaatcattatggtgaaggttggggagctactcttgctcatttgtacggtcgtaaggta |
25060792 |
T |
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| Q |
153 |
ttattatttcttcctct |
169 |
Q |
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| T |
25060791 |
ctctaattccttcctct |
25060775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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