View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7877_low_1 (Length: 584)
Name: NF7877_low_1
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7877_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 523; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Original strand, 25064076 - 25064646
Alignment:
| Q |
1 |
actgcaattaagttgccttcaacatgcatatgttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25064076 |
actgcaattaagttgccttcaacatgcatatgttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcc |
25064175 |
T |
|
| Q |
101 |
cctcaaaactatatcagcctacatcaaatcaatgttaggttttccnnnnnnnnttgtgagagtgatataagttttataatttctaatatttgcctatata |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25064176 |
cctcaaaactatatcagcctacatcaaatcaatgttaggttttccaaaaaaaattgtgacagtgatataagttttataatttctaatatttgcctatata |
25064275 |
T |
|
| Q |
201 |
tgtgattatctaaactcttatttttcataggcaatatttaattataagtgaaaaatttataagtacaccttatattttgaaagactgaagagacttttga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25064276 |
tgtgattatctaaactcttatttttcataggcaatatttaattataagtgaaaaatttataagtacaccttatattttgaaagaccgaagagacttttga |
25064375 |
T |
|
| Q |
301 |
tattctagaacatagattcgaactcgttttttctcatttggtgtgtgatcttggtcactagactcttttatttcgaaaatgcacataaccaataaaacgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25064376 |
tattctagaacatagattcgaactcgttttttttcatttggtgtgtgatcttggtcactagactcttttatttcgaaaatgtacataaccaataaaacgt |
25064475 |
T |
|
| Q |
401 |
tacggtattaatagtcagaggaagaaataataataccttacgagcgtacaagtgagaaagtgtagctccccaaccttcatagtaactgtattgaacaatt |
500 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25064476 |
tacggtattaatagtcagaggaagaaataataataccttacgagcgtacaagtgagaaagtgtagctccccaaccttcatagtaactgtattgaacaatt |
25064575 |
T |
|
| Q |
501 |
gatgaaccaaacaacacaaatttaggcctcgttgttgctccccaactctgcaatggaagaaccttctttat |
571 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
25064576 |
gatgaaccaaacaacacaaatttaggcctcattgttgctccccaactgtgcaatggaagaaccttctttat |
25064646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 201 - 571
Target Start/End: Original strand, 25085702 - 25086079
Alignment:
| Q |
201 |
tgtgattatctaaactcttatttttcataggcaatatttaattataagtgaaaaatttataagtacaccttatattttgaaagactgaagagacttttga |
300 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
25085702 |
tgtgattatctaaaatcttatttttcataggcaatatttaattataagtgaaaaatttataagtacaccttatattttgaaagaccgaaaagacttttga |
25085801 |
T |
|
| Q |
301 |
tattctagaacatagattcgaactcgttttttctcatttggtgtgtgatcttggtcac-------tagactcttttatttcgaaaatgcacataaccaat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
25085802 |
tattctagaacatagattcgaactcgttttttcttatttggtgtgtgatcttggtcactactcactagactcttttatttcgaaaatgtacataaccaat |
25085901 |
T |
|
| Q |
394 |
aaaacgttacggtattaatagtcagaggaagaaataataataccttacgagcgtacaagtgagaaagtgtagctccccaaccttcatagtaactgtattg |
493 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25085902 |
taaactttacggtattgatagtcagaggaagaaataataataccttacgagcgtacaagtgagaaagtgtagctccccaaccttcatagtaactgtattg |
25086001 |
T |
|
| Q |
494 |
aacaattgatgaaccaaacaacacaaatttaggcctcgttgttgctccccaactctgcaatggaagaaccttctttat |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25086002 |
aacaattgatgaaccaaacaacacaaatttaggcctcgttgttgctccccaactctgcaatggaagaaccttctttat |
25086079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 417 - 537
Target Start/End: Original strand, 25074278 - 25074398
Alignment:
| Q |
417 |
agaggaagaaataataataccttacgagcgtacaagtgagaaagtgtagctccccaaccttcatagtaactgtattgaacaattgatgaaccaaacaaca |
516 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
25074278 |
agaggaagaaataataataccttgcgagcatacaagtgagaaagagtagctccccaaccttcatagtaactgtattgaacaattgaagaaccaaacaaca |
25074377 |
T |
|
| Q |
517 |
caaatttaggcctcgttgttg |
537 |
Q |
| |
|
|||||||||||||| |||||| |
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| T |
25074378 |
caaatttaggcctcattgttg |
25074398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 33 - 201
Target Start/End: Original strand, 25085492 - 25085664
Alignment:
| Q |
33 |
ttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcccctcaaaactatatcagcctacatcaaatcaa |
132 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
25085492 |
ttcaataccttaggaaatattttatccaaaacttgcagagcacgccttgaattccaagcagcatatccccgcaaaactatatcagcctacattaaatcaa |
25085591 |
T |
|
| Q |
133 |
tgttaggttttccnnnnnnnnttgtgagagtgatataag-----ttttataatttctaatatttgcctatatat |
201 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| ||||||||||||||||| |||| ||||||| |
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|
| T |
25085592 |
tgttaggtcttcc-aaaaaatttgtgagagtgatataagtttaattttataatttctaataattgcatatatat |
25085664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 25091386 - 25091489
Alignment:
| Q |
33 |
ttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcccctcaaaactatatcagcctacatcaaatcaa |
132 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25091386 |
ttcaataccttgggaaatattttatccaaaacttggagagcatgccttgaagtccaagcagcatatcccctcaaaactatatcagcctacatcaaatcaa |
25091485 |
T |
|
| Q |
133 |
tgtt |
136 |
Q |
| |
|
|||| |
|
|
| T |
25091486 |
tgtt |
25091489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 434 - 530
Target Start/End: Original strand, 25091829 - 25091925
Alignment:
| Q |
434 |
taccttacgagcgtacaagtgagaaagtgtagctccccaaccttcatagtaactgtattgaacaattgatgaaccaaacaacacaaatttaggcctc |
530 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
25091829 |
taccttacgagcatacaagtgagtaagagtagctccccaaccttgatagtaactgtgttgaacaattgaagaaccaaacaacacaaatttaggcctc |
25091925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 25073824 - 25073946
Alignment:
| Q |
14 |
tgccttcaacatgcatatgttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcccctcaaaactata |
113 |
Q |
| |
|
||||||||||| ||||| ||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |
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|
| T |
25073824 |
tgccttcaacaatcatatacacaataccttggaaaatattttatccaaaacttggagagcatgccttgaattccaaccagcatatccccgtaaaagtata |
25073923 |
T |
|
| Q |
114 |
tcagcctacatcaaatcaatgtt |
136 |
Q |
| |
|
||||||| | ||||| ||||||| |
|
|
| T |
25073924 |
tcagcctgcgtcaaaccaatgtt |
25073946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 25074029 - 25074103
Alignment:
| Q |
154 |
ttgtgagagtgatataagttttataatttctaatatttgcctatatatgtgattatctaaactcttatttttcat |
228 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
25074029 |
ttgtgatagtgatataagttttaaaatttctaatatttgccaatatatgtgattatctaaaatcttatttttcat |
25074103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 25091574 - 25091673
Alignment:
| Q |
154 |
ttgtgagagtgatataagttttataatttctaatatttgcctatatatgtgattatctaaactcttatttttcataggcaatatttaattataagtgaaa |
253 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||||||||| || ||||||||||| ||||||| ||| |||||||||||| |||||| |||||||||||| |
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|
| T |
25091574 |
ttgtgatagtgatataagttttaaaatgtctaatattttccaatatatgtgatcatctaaaatctcatttttcatagggaatatt---ttataagtgaaa |
25091670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 417 - 530
Target Start/End: Original strand, 25060775 - 25060891
Alignment:
| Q |
417 |
agaggaagaaataataataccttacgagcgtacaagtgagaaagtgtagctccccaaccttca---tagtaactgtattgaacaattgatgaaccaaaca |
513 |
Q |
| |
|
|||||||| ||| | | |||||||||| ||||||| |||| ||| |||||||||||||||||| || | | ||||||||||||| || |||||||||| |
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|
| T |
25060775 |
agaggaaggaattagagtaccttacgaccgtacaaatgagcaagagtagctccccaaccttcaccataatgattgtattgaacaatggaagaaccaaaca |
25060874 |
T |
|
| Q |
514 |
acacaaatttaggcctc |
530 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
25060875 |
acacaaatttaggcctc |
25060891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 25059322 - 25059412
Alignment:
| Q |
34 |
tcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcccctcaaaactatatcagcctacat |
124 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| ||| || || ||||||||||| |||||||||||| ||||||||||||| ||||||| |
|
|
| T |
25059322 |
tcaataccttaggaaaaatatcatccacaacttgtagaccacgcgttgaattccaaccagcatatccccgcaaaactatatcaacctacat |
25059412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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