View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7877_low_10 (Length: 321)
Name: NF7877_low_10
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7877_low_10 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: scaffold0103 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 4416 - 4709
Alignment:
| Q |
15 |
aacgctagcatcgaagacgcttgaaaaatgtcccatttt-ttaggaaacttctacccacattcaattgttggtggaaaagataaatgttgaggtgata-t |
112 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4416 |
aacgctcgcatcgaagacgcttgaaaaatgtcccatttttttaggaaacttctacccacattcaattgttggtggaaaagataaatgttgaggtgatatt |
4515 |
T |
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| Q |
113 |
aattatacacgtcatggccaaataatgacaaagagtgcttatgcatgaagtggctgtttcatgct-nnnnnnntcatcaaataagagtccaatcccataa |
211 |
Q |
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| T |
4516 |
aattatacacgtcatggccaaataatgacaaagagtgcttatgcatgaagtggttgtttcatgctaaaaaaaatcatcaaataagagtccaatcccataa |
4615 |
T |
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| Q |
212 |
ataattttaggatggttatgcgataaagaatgtaattgactgataatccccatctaatcttcaactctttcttagtttcgcatgagagtacatt |
305 |
Q |
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| T |
4616 |
gtaattttaggatggttatgcgataaagaatgtaattgactgataatacccgtctaatcatcaactatttcttagtttcgcatgagagtacatt |
4709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 2635593 - 2635300
Alignment:
| Q |
15 |
aacgctagcatcgaagacgcttgaaaaatgtcccatttttt-aggaaacttctacccacattcaattgttggtggaaaagataaatgttgaggtgata-t |
112 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2635593 |
aacgctcgcatcgaagacgcttgaaaaatgtcccatttttttaggaaacttctacccacattcaattgttggtggaaaagataaatgttgaggtgatatt |
2635494 |
T |
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| Q |
113 |
aattatacacgtcatggccaaataatgacaaagagtgcttatgcatgaagtggctgtttcatgct-nnnnnnntcatcaaataagagtccaatcccataa |
211 |
Q |
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| T |
2635493 |
aattatacacgtcatggccaaataatgacaaagagtgcttatgcatgaagtggttgtttcatgctaaaaaaaatcatcaaataagagtccaatcccataa |
2635394 |
T |
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| Q |
212 |
ataattttaggatggttatgcgataaagaatgtaattgactgataatccccatctaatcttcaactctttcttagtttcgcatgagagtacatt |
305 |
Q |
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| T |
2635393 |
gtaattttaggatggttatgcgataaagaatgtaattgactgataatacccgtctaatcatcaactatttcttagtttcgcatgagagtacatt |
2635300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 159 - 305
Target Start/End: Complemental strand, 2566657 - 2566512
Alignment:
| Q |
159 |
gaagtggctgtttcatgctnnnnnnntcatcaaataagagtccaatcccataaataattttaggatggttatgcgataaagaatgtaattgactgataat |
258 |
Q |
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||||||| ||||||||||| ||||||||||||||| |||||| |||| || |||||||||||| | ||||||| |||||| ||||||| | ||| |
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| T |
2566657 |
gaagtggttgtttcatgctaacaaaatcatcaaataagagttcaatccaataagtacttttaggatggtcacgcgataa-gaatgttattgactaacaat |
2566559 |
T |
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| Q |
259 |
ccccatctaatcttcaactctttcttagtttcgcatgagagtacatt |
305 |
Q |
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| T |
2566558 |
ccccatctcctcttaaactatttcttagtttcacatgagtgtacatt |
2566512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 2671302 - 2671405
Alignment:
| Q |
201 |
caatcccataaataattttaggatggttatgcgataaagaatgtaattgactgataatccccatctaatcttcaactctttcttagtttcgcatgagagt |
300 |
Q |
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|||||| |||| || ||||||||| || ||| ||| | |||||| |||||||||||| | ||||||| ||||||| |||||||||||||| |||||| || |
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| T |
2671302 |
caatccaataagtacttttaggattgtcatgtgatta-gaatgttattgactgataaacaccatctactcttcaaatctttcttagtttcacatgagtgt |
2671400 |
T |
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| Q |
301 |
acatt |
305 |
Q |
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||||| |
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| T |
2671401 |
acatt |
2671405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 2593527 - 2593429
Alignment:
| Q |
15 |
aacgctagcatcgaagacgcttgaaaaatgtcccattttt-taggaaacttctacccacattcaattgttggtggaaaagataaatgttgaggtgatat |
112 |
Q |
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|||||| ||||||||||| ||||||||| |||| | ||| |||| ||||| ||||| ||||| ||||||||||||| ||||||| |||||||||||| |
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| T |
2593527 |
aacgcttgcatcgaagacacttgaaaaacgtcctttctttgtaggtaactttaacccatattcagttgttggtggaaaggataaatattgaggtgatat |
2593429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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