View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7877_low_13 (Length: 273)
Name: NF7877_low_13
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7877_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 44864210 - 44864461
Alignment:
| Q |
1 |
caaaagttttggtacagttggagaaagaagatgtcatccaagaggtgagctttatgtgtattgaataaatgtgttacctgagtgaggagtgttagttgta |
100 |
Q |
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| T |
44864210 |
caaaagttttggtacagttggagaaagaagatgtcatccaagaggtgagctttatgtgtattgaataaatgtgttacctgagtgaggagtgttagttgta |
44864309 |
T |
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| Q |
101 |
tgatttacaaagcatcaataacttgggacagctaggtatggattctaattgagaaccaaataactttccttttttggagaatcagttttgtaataaattg |
200 |
Q |
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| T |
44864310 |
tgatttacaaagcatcaataacttgggacagctaggtatggattctaattgagaaccaaataactttccttttttggagaatcagttttgtaataaattg |
44864409 |
T |
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| Q |
201 |
tcactagttcttaacatattcagcattggagatgaacaaattggtttgtcat |
252 |
Q |
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| T |
44864410 |
tcactagttcttaacatattcagcattggagatgaacaaattggtttgtcat |
44864461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 44882107 - 44882254
Alignment:
| Q |
19 |
tggagaaagaagatgtcatccaagaggtgagctttatgtgtattgaataaatgtgttacctgagtgaggagtgttagttgtatgatttacaaagcatcaa |
118 |
Q |
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| T |
44882107 |
tggagaaagcggacgtcatccaagaggtgagctttatgtgtattgaataaatgtgccacctcagtgaggag---tagtggtatcatttataaaacaccaa |
44882203 |
T |
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| Q |
119 |
taacttgggacagctaggtatggattctaattgagaaccaaataactttcctttt |
173 |
Q |
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| T |
44882204 |
taacttggga----tagctatgggttctacttgagaaccaagtaactttcctttt |
44882254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 44849958 - 44850026
Alignment:
| Q |
4 |
aagttttggtacagttggagaaagaagatgtcatccaagaggtgagctttatgtgtattgaataaatgt |
72 |
Q |
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| T |
44849958 |
aagttttggctcagatggagaaagaagatgtcatccaagaggtgagctttatgtgtattgaataaatgt |
44850026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 44838150 - 44838221
Alignment:
| Q |
1 |
caaaagttttggtacagttggagaaagaagatgtcatccaagaggtgagctttatgtgtattgaataaatgt |
72 |
Q |
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| T |
44838150 |
caaaagtttttgctcagatggagaaacctgatgtcatccaagaggtgaactttatgtctattgattaaatgt |
44838221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 44850148 - 44850193
Alignment:
| Q |
203 |
actagttcttaacatattcagcattggagatgaacaaattggtttg |
248 |
Q |
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| T |
44850148 |
actagttcgtaacatattcagcattggagataaatgaattggtttg |
44850193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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