View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7877_low_15 (Length: 262)
Name: NF7877_low_15
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7877_low_15 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 43177891 - 43178153
Alignment:
| Q |
1 |
cacaattgctaccccatgattcagctca-gtgccacagtgcccatatgataaacttggccttcaaaataattttgaacttcatatatataacacaatatc |
99 |
Q |
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| T |
43177891 |
cacaattgctaccccatgattcagctcatgtgccacagtgcccatatgataaacttggccttcaaaataattttgaacttcatatatataacataatatc |
43177990 |
T |
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| Q |
100 |
tcaaataatgtacatacgataatttcttgaccatacagaggcctagattgctaaccctactgttatcatatgcatacattattttgaagtactaaagtca |
199 |
Q |
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| T |
43177991 |
tcaaataatgtacatacaataatttcttgaccatacagaggcctagattgctaacactactgttatcatatgcatacattattttgaagtactaaagtca |
43178090 |
T |
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| Q |
200 |
tatgcaaaagatgtattagatcagctccaaacttttaatgcaacatcaaattccataaccata |
262 |
Q |
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| T |
43178091 |
tatgcaaaagatgtattagatcagctccaaatttttaatgtaacatcaaattccataaccata |
43178153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 48 - 262
Target Start/End: Original strand, 43171870 - 43172093
Alignment:
| Q |
48 |
ataaacttggccttcaaaataattttgaacttcatatatataacacaatatctcaaataatgtacatacgataatttcttgacc----atacagaggcct |
143 |
Q |
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| T |
43171870 |
ataaacttggccttcaaaataattttgaacttcatatatataacacgatatctcaaatcatgtacatacgataatttcttgaccatatatacagtggcct |
43171969 |
T |
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| Q |
144 |
agattgctaaccctactgt-----tatcatatgcatacattattttgaagtactaaagtcatatgcaaaagatgtattagatcagctccaaacttttaat |
238 |
Q |
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| T |
43171970 |
agattgctaacactattgttatcatatcatatgcatacattattttgaagcactaaagtcatattcaaaagatgtattagatcagctccaaattttgaat |
43172069 |
T |
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| Q |
239 |
gcaacatcaaattccataaccata |
262 |
Q |
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| T |
43172070 |
gtaacgtcaaattccataaccata |
43172093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 43180449 - 43180487
Alignment:
| Q |
1 |
cacaattgctaccccatgattcagctcagtgccacagtg |
39 |
Q |
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| T |
43180449 |
cacaattgctaccccatgattcagctcagtaccacagtg |
43180487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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