View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7877_low_16 (Length: 258)
Name: NF7877_low_16
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7877_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 93 - 252
Target Start/End: Original strand, 6851264 - 6851423
Alignment:
| Q |
93 |
taacaacatagtgtgaatatgattctcacgtggatctcatcctctatgcagccattatcatagtcttgtatttcagattttataatatgaaacgctccgg |
192 |
Q |
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| T |
6851264 |
taacaacatagtgtgaatatgattctcacgtggatctcatcctctatgcagctattatcatagtcttgtatttcagattttataatatgaaacgctccgg |
6851363 |
T |
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| Q |
193 |
tataaattaggaagagtttatatatacattatctttgcagttagacgaaaatgatgatgt |
252 |
Q |
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| T |
6851364 |
tacaaattaggaagagtttatatacacattacctttgcagtcagacgaaaatgatgatgt |
6851423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 6852991 - 6852959
Alignment:
| Q |
69 |
gaatctaaccaagcacaagatatctaacaacat |
101 |
Q |
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| T |
6852991 |
gaatctaaccaaacacaagatatctaacaacat |
6852959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 23710790 - 23710834
Alignment:
| Q |
208 |
gtttatatatacattatctttgcagttagacgaaaatgatgatgt |
252 |
Q |
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| T |
23710790 |
gtttatatacacattacctttgcattcagacgaaaatgatgatgt |
23710834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 6162306 - 6162350
Alignment:
| Q |
208 |
gtttatatatacattatctttgcagttagacgaaaatgatgatgt |
252 |
Q |
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| T |
6162306 |
gtttatatacacattacctttgcattcagacgaaaatgatgatgt |
6162350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 9635412 - 9635368
Alignment:
| Q |
208 |
gtttatatatacattatctttgcagttagacgaaaatgatgatgt |
252 |
Q |
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||||||||| |||||||||||||| | ||| |||||||||||||| |
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| T |
9635412 |
gtttatatacacattatctttgcactcagatgaaaatgatgatgt |
9635368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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