View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7877_low_17 (Length: 258)
Name: NF7877_low_17
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7877_low_17 |
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| [»] chr4 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 43178371 - 43178127
Alignment:
| Q |
14 |
catcactagaggtcatctctagcatatcatgttcaaggtatttatttggtcaaaattgggcttgtgatgcgattctggattttgatattgcattaaaatt |
113 |
Q |
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| T |
43178371 |
catcactagaggtcatctctagcatatcatgttcaaggtatttatttggtcaaaattgggcttgtgatgcgattctggattttgacattgcattaaaatt |
43178272 |
T |
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| Q |
114 |
ctggtgatgaatcacctcattgaatatgtatgattttagtaccttcagaattcagatgagtgatatcggatcatgctcaatacagctaattggaggcata |
213 |
Q |
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| T |
43178271 |
ctggtgatgaatcacctcattgaatatgtaagattttagtaccttcagaattcagatgagtgatatcgtatcatgctcaatacaggtaattggaggcata |
43178172 |
T |
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| Q |
214 |
ttttagtcaaggttggcttatggttatggaatttgatgttacatt |
258 |
Q |
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| T |
43178171 |
ttttagtcaaggttggcttatggttatggaatttgatgttacatt |
43178127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 31 - 258
Target Start/End: Complemental strand, 43172291 - 43172067
Alignment:
| Q |
31 |
tctagcatatcatgttcaaggtatttatttggtcaaaattgggcttgtgatgcgattctggattttgatattgcattaaaattctggtgatg----aatc |
126 |
Q |
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| T |
43172291 |
tctagcatatcatgttcaagatatttatttgatcaagattaggcttgtgatgtgattctggattttgatattgcattaaaattctggtgaggtgataatc |
43172192 |
T |
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| Q |
127 |
acctcattgaatatgtatgattttagtaccttcagaattcagatgagtgatatcggatcatgctcaatacagctaattggaggcatattttagtcaaggt |
226 |
Q |
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| T |
43172191 |
acctcattgaatatttatgattttagtac-------ttttagattagtgatatcttatgatgctcaatacatgtaattggaggcatattttagtcaaggt |
43172099 |
T |
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| Q |
227 |
tggcttatggttatggaatttgatgttacatt |
258 |
Q |
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| T |
43172098 |
tggcttatggttatggaatttgacgttacatt |
43172067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 258
Target Start/End: Original strand, 36644089 - 36644258
Alignment:
| Q |
84 |
gattctggattttgatattgcattaaaattctggtgatgaatcacctcattgaatatgtatgattttagtaccttcagaattcagatgagtgatatcgga |
183 |
Q |
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| T |
36644089 |
gattgtggattttgatattgcattaaaactatggggatgaatcacctcattgaatatgtatgactttagtac-------tttgagattagtgatatcata |
36644181 |
T |
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| Q |
184 |
tcatgctcaatacagctaa--ttggaggcatattttagtcaaggttggcttatggttatggaatttgatgttacatt |
258 |
Q |
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| T |
36644182 |
tcatgctcaaaacaggtaattttatagacctaatttagtcaaggctggcttatggtcgtggaatttgatattacatt |
36644258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 36849695 - 36849625
Alignment:
| Q |
84 |
gattctggattttgatattgcattaaaattctggtgatgaatcacctcattgaatatgtatgattttagta |
154 |
Q |
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| T |
36849695 |
gattgtggattttgatattgtattaatattctggtgaagaattacctctttgaatatgtatgaatttagta |
36849625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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