View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7877_low_21 (Length: 245)
Name: NF7877_low_21
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7877_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 11118911 - 11118672
Alignment:
| Q |
1 |
ccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgacacttatagttttactaacctacaaatactgaaattat-ttctgtcatattgat |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||| ||||| |
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| T |
11118911 |
ccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgtcacttatagttttactaacctacaaatactcaaattatcttctgtcaacttgat |
11118812 |
T |
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| Q |
100 |
tgagtttcacaacttacaaggagatttcccacgtttgcaacatctgcatctttccaataacaaacttaatggaagaatgcccaattggtttcttggaaat |
199 |
Q |
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| T |
11118811 |
cgaatttcacaacttacaaggagaatttccaagtttgtcacatctggatctttccaaaaacaaacttaatggaagaatgcccaattggtttcttggaaat |
11118712 |
T |
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| Q |
200 |
aatttttggcaatctgtggacctctctcaaaacttgttca |
239 |
Q |
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| T |
11118711 |
atttattggcaatctgtggacctctctcataacttgttca |
11118672 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 42124116 - 42124033
Alignment:
| Q |
156 |
ataacaaacttaatggaagaatgcccaattggtttcttggaaataatttttggcaatctgtggacctctctcaaaacttgttca |
239 |
Q |
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| T |
42124116 |
ataacaaacttcatggaagaatgcccaattggttacttgaaaaaaattcattgctatttttgaacctctctcaaaacttgttca |
42124033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 25522500 - 25522542
Alignment:
| Q |
147 |
atctttccaataacaaacttaatggaagaatgcccaattggtt |
189 |
Q |
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| T |
25522500 |
atctttccaataacaaacttgatggaagaatgcccaattggtt |
25522542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25522353 - 25522397
Alignment:
| Q |
1 |
ccctttcaaggaatagtcagttgtcactaaaattcgaatccaatg |
45 |
Q |
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|||||||| |||||| ||| ||||||||||| ||||||||||||| |
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| T |
25522353 |
ccctttcatggaatactcaattgtcactaaacttcgaatccaatg |
25522397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 32681374 - 32681443
Alignment:
| Q |
3 |
ctttcaaggaatagtcagttgtcactaaaattcgaatccaatgacacttatagttttactaacctacaaa |
72 |
Q |
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|||||| |||||||||| ||||||||||| || |||||||||| || ||||| |||| || ||||||||| |
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| T |
32681374 |
ctttcatggaatagtcaattgtcactaaactttgaatccaatgtcagttatacttttccttacctacaaa |
32681443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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