View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7877_low_25 (Length: 239)

Name: NF7877_low_25
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7877_low_25
NF7877_low_25
[»] chr4 (5 HSPs)
chr4 (134-237)||(11119274-11119377)
chr4 (19-136)||(11119640-11119757)
chr4 (134-199)||(11119456-11119521)
chr4 (138-172)||(11119411-11119445)
chr4 (138-172)||(11119555-11119589)
[»] chr5 (7 HSPs)
chr5 (134-198)||(42118314-42118378)
chr5 (134-237)||(42124704-42124807)
chr5 (134-237)||(34231601-34231704)
chr5 (19-77)||(42130147-42130205)
chr5 (168-238)||(41712465-41712534)
chr5 (138-233)||(34239357-34239452)
chr5 (19-76)||(42124914-42124971)
[»] chr2 (1 HSPs)
chr2 (138-237)||(12249678-12249777)
[»] chr6 (1 HSPs)
chr6 (134-237)||(25521818-25521921)
[»] chr3 (1 HSPs)
chr3 (19-71)||(8524377-8524429)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 11119377 - 11119274
Alignment:
Q  134 tcactttcaaaccttcaacaacttattcacttggatctttcttccaactcatttagcggtcaaatatcagatgtgtttggtcggatgactaaactgcaag 233  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||| |||| |||||||||||||| ||||||| ||||||||||    
T  11119377 tcactttcaaaccttcaacaacttattcacttggatatttcttccaatgcatttagcggtccaataccagatgtgtttggtgggatgacaaaactgcaag 11119278  T
Q  234 aact 237  Q
    ||||    
T  11119277 aact 11119274  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 11119757 - 11119640
Alignment:
Q  19 taaacggttcaatcccaccctcacttttaacacttccacatctaactttcttgtatcttgatcagaatgaactcagtagtcaaattccaaatgtttttaa 118  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||| | | | ||  |||||||| ||| |||||||||||  ||| |    
T  11119757 taaacggttcaatcccatcctcacttttaacacttccacgtctaactttcttggatctcggttacaaccaactcagtggtcgaattccaaatgcatttca 11119658  T
Q  119 cctgtcaaacaaatttca 136  Q
      ||||||||||||||||    
T  11119657 gatgtcaaacaaatttca 11119640  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 11119521 - 11119456
Alignment:
Q  134 tcactttcaaaccttcaacaacttattcacttggatctttcttccaactcatttagcggtcaaata 199  Q
    ||||||||||| |||||||||||||||||||||||||||   || || |||||||| |||||||||    
T  11119521 tcactttcaaatcttcaacaacttattcacttggatcttggatcgaattcatttagtggtcaaata 11119456  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 11119445 - 11119411
Alignment:
Q  138 tttcaaaccttcaacaacttattcacttggatctt 172  Q
    ||||||||||||||||||| |||||||||||||||    
T  11119445 tttcaaaccttcaacaactcattcacttggatctt 11119411  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 11119589 - 11119555
Alignment:
Q  138 tttcaaaccttcaacaacttattcacttggatctt 172  Q
    ||||||||||||||||||| |||||||||||||||    
T  11119589 tttcaaaccttcaacaactcattcacttggatctt 11119555  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 42118378 - 42118314
Alignment:
Q  134 tcactttcaaaccttcaacaacttattcacttggatctttcttccaactcatttagcggtcaaat 198  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||    
T  42118378 tcactttcaaaccttcaacaactcattcacttggatctttcttccaattcatttagtggtcaaat 42118314  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 42124807 - 42124704
Alignment:
Q  134 tcactttcaaaccttcaacaacttattcacttggatctttcttccaactcatttagcggtcaaatatcagatgtgtttggtcggatgactaaactgcaag 233  Q
    |||||||||||||||| |||||| |||||||||||||||   |  || |||||||| ||||||||  |||||||||||||| ||||||| ||||||||||    
T  42124807 tcactttcaaaccttcgacaactcattcacttggatcttgggtggaattcatttagtggtcaaatcccagatgtgtttggtgggatgaccaaactgcaag 42124708  T
Q  234 aact 237  Q
    ||||    
T  42124707 aact 42124704  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 34231601 - 34231704
Alignment:
Q  134 tcactttcaaaccttcaacaacttattcacttggatctttcttccaactcatttagcggtcaaatatcagatgtgtttggtcggatgactaaactgcaag 233  Q
    |||||||||||||||| ||| || ||| ||||||||||||| | ||| ||||| |||||||||||  ||||||| |||||  ||||||| ||||||||||    
T  34231601 tcactttcaaaccttcgacatctcattaacttggatctttcatacaattcattaagcggtcaaattccagatgtatttggcgggatgaccaaactgcaag 34231700  T
Q  234 aact 237  Q
    ||||    
T  34231701 aact 34231704  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 42130205 - 42130147
Alignment:
Q  19 taaacggttcaatcccaccctcacttttaacacttccacatctaactttcttgtatctt 77  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||||||||||| |||||    
T  42130205 taaacggttcaatcccatcatcacttttaacacttccacgtctaactttcttgcatctt 42130147  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 41712465 - 41712534
Alignment:
Q  168 atctttcttccaactcatttagcggtcaaatatcagatgtgtttggtcggatgactaaactgcaagaactg 238  Q
    ||||||| | ||| |||||||||||||||||| |||||||||||||| ||||||| ||| |||||||||||    
T  41712465 atctttcattcaattcatttagcggtcaaataccagatgtgtttggtgggatgaccaaa-tgcaagaactg 41712534  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 34239357 - 34239452
Alignment:
Q  138 tttcaaaccttcaacaacttattcacttggatctttcttccaactcatttagcggtcaaatatcagatgtgtttggtcggatgactaaactgcaag 233  Q
    |||||||||||||| | || || |||||| |||||||   ||| ||| |||||||||||||  ||||||| |||||| ||||||| ||||||||||    
T  34239357 tttcaaaccttcaaaatctcatccacttgtatctttcaggcaattcacttagcggtcaaatcccagatgtatttggtaggatgaccaaactgcaag 34239452  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 42124971 - 42124914
Alignment:
Q  19 taaacggttcaatcccaccctcacttttaacacttccacatctaactttcttgtatct 76  Q
    |||| |||||||||||| |||||||||||| |||||||  ||||||||||||| ||||    
T  42124971 taaatggttcaatcccatcctcacttttaaaacttccaactctaactttcttggatct 42124914  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 12249777 - 12249678
Alignment:
Q  138 tttcaaaccttcaacaacttattcacttggatctttcttccaactcatttagcggtcaaatatcagatgtgtttggtcggatgactaaactgcaagaact 237  Q
    |||||||||||||||  || |||||| |||||||||| | ||| |||||||||||||||||| ||||||||||| ||  |||||| ||||||||||||||    
T  12249777 tttcaaaccttcaacgtctcattcacgtggatctttcattcaattcatttagcggtcaaataccagatgtgtttagtgcgatgaccaaactgcaagaact 12249678  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 25521818 - 25521921
Alignment:
Q  134 tcactttcaaaccttcaacaacttattcacttggatctttcttccaactcatttagcggtcaaatatcagatgtgtttggtcggatgactaaactgcaag 233  Q
    |||||||||||||||||||| || |||| |||||||||||| | ||| |||||||| ||||||||  |||| ||||| ||| ||||||| ||| ||||||    
T  25521818 tcactttcaaaccttcaacatctcattcgcttggatctttcatacaattcatttagaggtcaaatcccagacgtgttcggtgggatgaccaaattgcaag 25521917  T
Q  234 aact 237  Q
    ||||    
T  25521918 aact 25521921  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 8524429 - 8524377
Alignment:
Q  19 taaacggttcaatcccaccctcacttttaacacttccacatctaactttcttg 71  Q
    |||| |||||||||||| ||||||||||||||||||||| |||||||| ||||    
T  8524429 taaatggttcaatcccatcctcacttttaacacttccacgtctaacttacttg 8524377  T

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