View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7877_low_26 (Length: 239)
Name: NF7877_low_26
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7877_low_26 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 21150746 - 21150525
Alignment:
| Q |
18 |
ctttacctccagtttctgacaaatcaaacataaatcaaaatagcgtgtatcagaacataatcgacttcttcaaattctactatgctataaagctaccgcc |
117 |
Q |
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| T |
21150746 |
ctttacctccagcttctgacagatcaaacataaatcaaaatagcgtgtatcagaacataatcgacttcttcaaattctactacgctatagagctacagac |
21150647 |
T |
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| Q |
118 |
gttatttaacaatagtagtaaaaatggttgtgataaaaatgtataaggtatcttgtaccgcaagtttttattgcatcgtgacattttggcatcaacttgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21150646 |
gttatttaacaatagtagtaaaaatggttgtgataaaaatgtataaggtatcttgtaccgcaagtttttattgcatcatgacattttggcatcaacttgt |
21150547 |
T |
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| Q |
218 |
tgatatcgtcttgatcttcctt |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
21150546 |
tgatatcgtcttgatcttcctt |
21150525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 235
Target Start/End: Complemental strand, 21125759 - 21125644
Alignment:
| Q |
120 |
tatttaacaatagtagtaaaaatggttgtgataaaaatgtataaggtatcttgtaccgcaagtttttattgcatcgtgacattttggcatcaacttgttg |
219 |
Q |
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| T |
21125759 |
tatttgacaatactagtaaaaatgggtgtgataagagtgtaaaaggtatcttgtaccgcaagtttttatggcaacctcgcaatcagggatcaacttgttg |
21125660 |
T |
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| Q |
220 |
atatcgtcttgatctt |
235 |
Q |
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| T |
21125659 |
atatcagcttgatctt |
21125644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 235
Target Start/End: Complemental strand, 21145849 - 21145734
Alignment:
| Q |
120 |
tatttaacaatagtagtaaaaatggttgtgataaaaatgtataaggtatcttgtaccgcaagtttttattgcatcgtgacattttggcatcaacttgttg |
219 |
Q |
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||||| |||||| |||||||||||| |||||||| | |||| ||||||||||||||||||||||||||| ||| | | || | || |||||||||||| |
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| T |
21145849 |
tatttgacaatactagtaaaaatgggtgtgataagagtgtaaaaggtatcttgtaccgcaagtttttatggcaacctcgcaatcagggatcaacttgttg |
21145750 |
T |
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| Q |
220 |
atatcgtcttgatctt |
235 |
Q |
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||||| ||||||||| |
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| T |
21145749 |
atatcagcttgatctt |
21145734 |
T |
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