View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7877_low_4 (Length: 373)
Name: NF7877_low_4
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7877_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 45991849 - 45991516
Alignment:
| Q |
19 |
ctccgccgtatattctctccaagaaattatcatcaaacataaacattcaaactcatgcctttgaatccaagaagaaaatttaattagatatttgttgttg |
118 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45991849 |
ctccgccgtatattttctccaagaaattatcatcaaacataaacattcaaactcatgcctttgaatccaagaagaaaatttaattagatattttttgttg |
45991750 |
T |
|
| Q |
119 |
ttgtgattgttggtgttgatgaagctgaaatctctagtgttgttgattatggaatgataaaagaaggttgatggatgaaaacttaatcagaaatttgttg |
218 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45991749 |
ttgtgattgttggtgttgatgaagttgaaatctctgttgttgttgattatggaatgataaaagaaggttgatggatgaaaatttaatcagaaatttgttg |
45991650 |
T |
|
| Q |
219 |
ttgttactctcaacaacaacaacaataagattgtcgctctcttacatccccgtaagtgctactttagcaaa-ttttgatgagtgtagcaacactagttaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
45991649 |
ttgttactctcaacaacaacaacaataaggttgtcgctctcttacatccccgtaagtgctactttagcaaatttttgatgggtgtagcaacactagttaa |
45991550 |
T |
|
| Q |
318 |
ctctcttttcttccccaaatttctctcaaaaacc |
351 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
45991549 |
ctctcttttctttcccaaatttctctcaaaaacc |
45991516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 46151769 - 46151427
Alignment:
| Q |
19 |
ctccgccgtatattctctccaagaaattatcatcaaacataaacattcaaactcat--gcctttgaatccaagaagaaaatttaattagatatttgttgt |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46151769 |
ctccaccgtatattctctccaagaaattatcatcacacataaacattcaaactcatatgcctttgaatccaagaagaaaatttaattagatatttgttgt |
46151670 |
T |
|
| Q |
117 |
tgttgtgattgttggtgttgatgaagctgaaatctctagtgttgttgattatggaatgataaaagaaggttgatggatgaaaacttaatcagaaatttgt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46151669 |
tgttgtgattgttggtgttgatgaagctgaaatctctgttgttgttgattatagaatgataaaagaaggttgatggatgaaaatttaatcagaaatttgt |
46151570 |
T |
|
| Q |
217 |
tgttgttactctcaacaacaacaacaataagattgtcgctctcttacatccccgtaagtgctactttagc---aaattttgatgagtgtagcaacactag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||| || || ||||||||||||||| |
|
|
| T |
46151569 |
tgttgttactctcaacaacaacaacaataaagttgtcgctctcttacatccccataagtgcaactttagcaaaaaaaattattgggtgtagcaacactag |
46151470 |
T |
|
| Q |
314 |
ttaactctcttttcttccccaaatttctctcaaaaaccataaa |
356 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46151469 |
ttaactctcttttcttccccagatttctctcaaaaaccataaa |
46151427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 29 - 240
Target Start/End: Complemental strand, 3871843 - 3871635
Alignment:
| Q |
29 |
tattctctccaagaaattatcatcaaacataaacattcaaactcatgcctttgaatccaagaagaaaatttaattagatatttgttgttgttgtgattgt |
128 |
Q |
| |
|
||||| |||| | |||||||||||| |||| |||||||||||||| |||||| |||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
3871843 |
tattccctcccataaattatcatcacacatgaacattcaaactcaagcctttcaatccaagaagaaattttaattagg-atttgttgttgttgtgatta- |
3871746 |
T |
|
| Q |
129 |
tggtgttgatgaagctgaaatctctagtgttgttgattatggaatgataaaagaaggttgatggatgaaaacttaatcagaaatttgttgttgttactct |
228 |
Q |
| |
|
| ||||||||| || || || | |||||||||| ||||||||||||||||||| | ||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
3871745 |
-gaatttgatgaagttgcaacctttgttgttgttgatcatggaatgataaaagaaggctaatggatgaaaatttaattagaaatttgttgttgttactct |
3871647 |
T |
|
| Q |
229 |
caacaacaacaa |
240 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3871646 |
caacaacaacaa |
3871635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 19802388 - 19802334
Alignment:
| Q |
87 |
aagaagaaaatttaattagatatttgttgttgttgtgattgttggtgttgatgaa |
141 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
19802388 |
aagaagaaaattaaattagaaatttgttgttgttgagattgttggtggtgatgaa |
19802334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 37464522 - 37464571
Alignment:
| Q |
93 |
aaaatttaattagatatttgttgttgttgtgattgttggtgttgatgaag |
142 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||| |||||||| |
|
|
| T |
37464522 |
aaaatttaattagaaatttgttgttgttgatattgttggtggtgatgaag |
37464571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 5225030 - 5225094
Alignment:
| Q |
87 |
aagaagaaaatttaattagatatttgttgttgttgtgattgttggtgttgatgaagctgaaatct |
151 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||| |||||||||||||||||||| | |||||| |
|
|
| T |
5225030 |
aagaagaaaatttaattagaaatttgatgctgtttagattgttggtgttgatgaagtttaaatct |
5225094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University