View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7877_low_5 (Length: 429)
Name: NF7877_low_5
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7877_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 1186590 - 1186343
Alignment:
| Q |
1 |
ctaaacaaaatttgctttaatctggtatagttcttacatgatggtttctttaatctggtataataagtgttcgtttggatacgcatacaaactatatttc |
100 |
Q |
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| T |
1186590 |
ctaaacaaaatttgctttaatctggtatagttattacatgatggtt--------ctggtataataagtgttcgtttggatacgcatccaaactatttttc |
1186499 |
T |
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| Q |
101 |
tcgtgtctcaatgtcttctcgctgtgataattgtgaagctacagattgtagaagtgaaaaaacgcacggtggcacgcaaaaacaaacacacgaaaatagt |
200 |
Q |
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| T |
1186498 |
tcgcgtctcaatgtcttctcgctgtgataattgtgaagctacagattgtagaagtgaaaaaacgcacggtggcacgcgaaaacaaacacacgaaaatagt |
1186399 |
T |
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| Q |
201 |
ctatatcaaatgtgagaagtaa-gtaagagtttgactcctcaaaagtatatgcatt |
255 |
Q |
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| T |
1186398 |
ctatatgaaatgtgagaagtaaggaaagagtttgactcctcaaaagtatatgcatt |
1186343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 255 - 418
Target Start/End: Complemental strand, 1007149 - 1006986
Alignment:
| Q |
255 |
ttgatgtatcagattcttcttctgatgatgattcaccaaatgaaacccctaatggcgccaccgttcttccttcaattcacattcacattccgcttccaaa |
354 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1007149 |
ttgatgtatcagattcttcttcttctgatgattcaccaaatgaaacccctaatgtcgccaccgttcttccttcaattcacattcacattccgcttccaaa |
1007050 |
T |
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| Q |
355 |
tccctcttcagatgtcaactcactaggtattattattctattccttttcaatttttgttttcat |
418 |
Q |
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| T |
1007049 |
tccctcttcagatgtcaactctctaggtattattcttctattccttttcaatttttgttttcat |
1006986 |
T |
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