View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7877_low_7 (Length: 339)
Name: NF7877_low_7
Description: NF7877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7877_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-172; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 36210027 - 36209719
Alignment:
| Q |
17 |
agatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattgataagagacatggcatgattctcttccaacaagagcgt |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36210027 |
agatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattgataagagacatggcatgattttcttccaacaagagcgt |
36209928 |
T |
|
| Q |
117 |
ttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgctttgcagttata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36209927 |
ttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgctttgcagttata |
36209828 |
T |
|
| Q |
217 |
gatgaactaagattttgtattctgtcaaatgcttgtgtttgtattatgtccgatacatgtatccattatggtaagatttcccttgtttcttgcagtaatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36209827 |
gatgaactaagattttgtattctgtcaaatgcttgtgtttgtattatgtccgatacatgtatccattatggtaagatttcccttgtttcttgcagtaatt |
36209728 |
T |
|
| Q |
317 |
tcctctgtg |
325 |
Q |
| |
|
||||||||| |
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|
| T |
36209727 |
tcctctgtg |
36209719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 36188594 - 36188278
Alignment:
| Q |
17 |
agatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattgata--------agagacatggcatgattctcttccaac |
108 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
36188594 |
agatattgctcacatctacaagtttggaggttttatctgagcaaatgaaggttcataaattgatacaattgtgagagacatgacatgattctcttccaac |
36188495 |
T |
|
| Q |
109 |
aagagcgtttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgc-ttt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36188494 |
aagagcgtttgtagcagagatgatgaaaatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgctttt |
36188395 |
T |
|
| Q |
208 |
gcagttatagatgaactaagattttgtattctgtcaaatgcttgtgtttgtattatgtccgatacatgtatccattatggtaagatttcccttgtttctt |
307 |
Q |
| |
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| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
36188394 |
gtaggtatagatgaactaagattttgtattctgtcaaatgcttgtgtttgtattatatccgagacatgtatccattatggtaagatttccctt-tttctt |
36188296 |
T |
|
| Q |
308 |
gcagtaatttcctctgtg |
325 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
36188295 |
gcagtaatttcctctgtg |
36188278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 36196912 - 36196595
Alignment:
| Q |
17 |
agatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattgata--------agagacatggcatgattctcttccaac |
108 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
36196912 |
agatattgctcacatctacaagtttggaggttttatctgagcaaatgaaggttcataaattgatacaattgtgagagacatgacatgattctcttccaac |
36196813 |
T |
|
| Q |
109 |
aagagcgtttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgc-ttt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
36196812 |
aagagcgtttgtagcagagatgatgaaaatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgctttt |
36196713 |
T |
|
| Q |
208 |
gcagttatagatgaactaagattttgtattctgtcaaatgcttgtgtttgtattatgtccgatacatgtatccattatggtaagatttcccttgtttctt |
307 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| |
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|
| T |
36196712 |
gtaggtatagatgaactaagattttgtattctgtcaaatgcttgtgtttgtattatatccgagacatgtatccattatggtaagatttcccctgtttctt |
36196613 |
T |
|
| Q |
308 |
gcagtaatttcctctgtg |
325 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
36196612 |
gcagtaatttcgtctgtg |
36196595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 36207940 - 36207688
Alignment:
| Q |
17 |
agatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattgata--------agagacatggcatgatt-ctcttccaa |
107 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||||||| || ||||||||| ||||||| ||| ||||||||| ||||||| ||||||||| |
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|
| T |
36207940 |
agatattgctgacatctacaagctcggaggctttatccaaacatatgaaggttgataaattaatacaattatcagagacatgacatgatttctcttccaa |
36207841 |
T |
|
| Q |
108 |
caagagcgtttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttt |
207 |
Q |
| |
|
| || | ||| | || |||| |||||||||| ||||||| ||||||||||||| | | |||||||||||||||||||||||||||||| | | ||| ||| |
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|
| T |
36207840 |
ccagtgtgttagaagtagagttgatgaaaatttgaagtccaaacatgcacatcatatcgaaaacaccatgttggagagattagaggttcacatgtgattt |
36207741 |
T |
|
| Q |
208 |
gcagttatagatgaactaagattttg-tattctgtcaaatgcttgtgtttgta |
259 |
Q |
| |
|
| ||| || |||||||||||||||| | |||||| ||||||||||| ||||| |
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|
| T |
36207740 |
gttgttgtatatgaactaagattttgtttttctgttaaatgcttgtgcttgta |
36207688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 36202468 - 36202310
Alignment:
| Q |
17 |
agatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattgata--------agagacatggcatgattctcttccaac |
108 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| ||||||| || |
|
|
| T |
36202468 |
agatattgctgacatctacaaatttggaggttttatccaaagaaatgaaggttcataaattgatacaattgtcagagacatgaaatgaatctcttcttac |
36202369 |
T |
|
| Q |
109 |
aagagcgtttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttgga |
167 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
36202368 |
tagagcgtttgaagcagagatgatgaaaatctgaagtcgaaacatgaacatagtttgga |
36202310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 36184756 - 36184500
Alignment:
| Q |
17 |
agatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattgata--------agagacatggcatgattct-cttccaa |
107 |
Q |
| |
|
|||||||||| ||||| ||||| | ||||| |||||||| || ||||||||| ||||| ||||| ||||||||| ||||||| | ||||||| |
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|
| T |
36184756 |
agatattgctcacatcaacaagctcggaggcattatccaaacatatgaaggttgataaagtgatacaattatcagagacatgacatgatttttcttccaa |
36184657 |
T |
|
| Q |
108 |
caagagcgtttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagatt----agaggttgagaagtg |
203 |
Q |
| |
|
| |||| ||| | ||||||| |||||||||||||||||| ||||||| | ||| | |||| ||||||||||||||||||| ||||||| | ||||| |
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|
| T |
36184656 |
ctagagtgttagaagcagagttgatgaaaatctgaagtccaaacatgaatatcatacggaagacaccatgttggagagattagagagaggttcacaagtg |
36184557 |
T |
|
| Q |
204 |
ctttgcagttatagatgaactaagattttg-tattctgtcaaatgcttgtgtttgta |
259 |
Q |
| |
|
||||| ||| ||||||||||||||||||| | |||||| ||||||||||| ||||| |
|
|
| T |
36184556 |
ctttgttgttgtagatgaactaagattttgtttttctgttaaatgcttgtgcttgta |
36184500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 36213369 - 36213218
Alignment:
| Q |
17 |
agatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattg--------ataagagacatggcatgattctcttccaac |
108 |
Q |
| |
|
||||||| || |||||||||||| |||||||||||||||| |||||||||| |||||||||| || ||||||||| ||||||||||||| ||| |
|
|
| T |
36213369 |
agatattactcacatctacaagtgtggaggttttatccaatcaaatgaaggctcataaattgattcaattatcagagacatgacatgattctcttcaaac |
36213270 |
T |
|
| Q |
109 |
aagagcgtttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatc |
160 |
Q |
| |
|
| || ||||| ||||||| |||| ||||| ||||||| ||||||||||||| |
|
|
| T |
36213269 |
taaagtgtttgaagcagagttgataaaaatttgaagtccaaacatgcacatc |
36213218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 36214833 - 36214722
Alignment:
| Q |
122 |
gcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgctttgcagttatagatga |
221 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||||| | |||||||||||| ||||||| |||||||||| |||| |||||||||| | ||||||| | |
|
|
| T |
36214833 |
gcagagatggtgaaaatttgaagtccaaacatgcactttatttggaaaacacaatgttggggagattagagattgacaagtgctttgttggtatagatca |
36214734 |
T |
|
| Q |
222 |
actaagattttg |
233 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
36214733 |
attaagactttg |
36214722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 36198960 - 36198878
Alignment:
| Q |
140 |
tgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgctttgcagttatagatgaa |
222 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| |||||||||||||||||| ||| ||||||||| || |||||||||| |
|
|
| T |
36198960 |
tgaagtctaaacatgcacatcctttggaaaacacaatgttggagagattagagattggtaagtgctttttaggtatagatgaa |
36198878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 36201080 - 36200857
Alignment:
| Q |
20 |
tattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattgata--------agagacatggcatgatt-ctcttccaacaa |
110 |
Q |
| |
|
||||||| ||| ||| |||| |||||||||||||| | ||||||| ||||||||||||| | ||||||||| |||||| || |||| || | |
|
|
| T |
36201080 |
tattgctcacacctaaaagtgtggaggttttatccgaacaaatgacagttcataaattgacacagttatcagagacatgatatgatttcttttcctacta |
36200981 |
T |
|
| Q |
111 |
gagcgtttgtagcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgctttgca |
210 |
Q |
| |
|
|| ||||| ||||||| ||| ||||| || ||| ||||||||||||| | |||||| ||||||||||||| |||||| |||||| | ||||| || |
|
|
| T |
36200980 |
gactgtttgaagcagagttgacgaaaacttgtagttcaaacatgcacatcatatggaaagcaccatgttggagtgattagtggttgacaggtgctgtgtt |
36200881 |
T |
|
| Q |
211 |
gttatagatgaactaagattttgt |
234 |
Q |
| |
|
| | |||||||||||||||||||| |
|
|
| T |
36200880 |
ggtgtagatgaactaagattttgt |
36200857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 36199040 - 36198991
Alignment:
| Q |
32 |
ctacaagtttggaggttttatccaagcaaatgaaggttcataaattgata |
81 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||| |||||| |
|
|
| T |
36199040 |
ctacaagtttggagattttatccaaacaaatgaaggttcataacttgata |
36198991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 36184376 - 36184340
Alignment:
| Q |
283 |
tatggtaagatttcccttgtttcttgcagtaatttcc |
319 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36184376 |
tatggtaagatttcacttgtttcttgcagtaatttcc |
36184340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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