View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7878_low_1 (Length: 484)
Name: NF7878_low_1
Description: NF7878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7878_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 40666556 - 40666351
Alignment:
| Q |
1 |
tagtctcatcctctaagtcaatgacgtccatcttctccctaatgcattggagagcagcttcagtgcaaagagcagcaaggtcagcaccaacatacccatg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666556 |
tagtctcatcctctaagtcaatgacgtccatcttctccctaatgcattgtagagcagcttcagtgcaaagagcagcaaggtcagcaccaacatacccatg |
40666457 |
T |
|
| Q |
101 |
agtattttttgaaattctctccaaatcaacctacagagtaaaatcgtaaatgagcaactgaaaatttgaggaaattgaaaacccttattaatactgcaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
40666456 |
agtattttttgaaattctctccaaatcaacctacagagtaaaatcgtaaatgagcaactgaaaatttgaggaaattgaaaaaccttattaatactgcagc |
40666357 |
T |
|
| Q |
201 |
tatcat |
206 |
Q |
| |
|
|||||| |
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|
| T |
40666356 |
tatcat |
40666351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 301 - 466
Target Start/End: Original strand, 40723818 - 40723983
Alignment:
| Q |
301 |
aatgcccaacttacatcatcagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccc |
400 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723818 |
aatgtccaacttacatcatgagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccc |
40723917 |
T |
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| Q |
401 |
tatcaaatctaccaaaccttctcaatgccgggtcaatgctattggggcgattagtggcccccatga |
466 |
Q |
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| T |
40723918 |
tatcaaatctaccaaaccttctcaatgccgggtcaatgctattggggcgattagtggcccccatga |
40723983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 40723450 - 40723629
Alignment:
| Q |
1 |
tagtctcatcctctaagtcaatgacgtccatcttctccctaatgcattggagagcagcttcagtgcaaagagcagcaaggtcagcaccaacatacccatg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723450 |
tagtctcatcctctaagtcaatgacgtccatcttctccctaatgcattgtagagcagcttcagtgcaaagagcagcaaggtcagcaccaacatacccatg |
40723549 |
T |
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| Q |
101 |
agtattttttgaaattctctccaaatcaacctacagagtaaaatcgtaaatgagcaactgaaaatttgaggaaattgaaaa |
181 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||| ||||||||| || | ||||||||||||||||| ||||| |
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| T |
40723550 |
agtatcttttgaaattctctccaaatcaacctacagag-aaagtcgtaaatgtgcgaatgaaaatttgaggaaatcgaaaa |
40723629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 301 - 428
Target Start/End: Complemental strand, 40666229 - 40666102
Alignment:
| Q |
301 |
aatgcccaacttacatcatcagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccc |
400 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666229 |
aatgtccaacttacatcatgagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccc |
40666130 |
T |
|
| Q |
401 |
tatcaaatctaccaaaccttctcaatgc |
428 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
40666129 |
tatcaaatctaccaaaccttctcaatgc |
40666102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 311 - 464
Target Start/End: Original strand, 41092655 - 41092808
Alignment:
| Q |
311 |
ttacatcatcagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatct |
410 |
Q |
| |
|
||||||| || | ||| ||||| || || ||||| || ||||| || ||||| ||||||| || ||||||||||||||||| || ||||||||||| || |
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| T |
41092655 |
ttacatcttcggcgagtttcatattctttgtatgaattcgaagaacctcaagacgcccaacctcgtctggaacaccaatatcaatctccctatcaaacct |
41092754 |
T |
|
| Q |
411 |
accaaaccttctcaatgccgggtcaatgctattggggcgattagtggcccccat |
464 |
Q |
| |
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|||||||| || | ||| ||||||||||||||||| | ||| ||||| ||||| |
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|
| T |
41092755 |
tccaaacctcctaagtgcagggtcaatgctattgggcctatttgtggctcccat |
41092808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 41092443 - 41092540
Alignment:
| Q |
3 |
gtctcatcctctaagtcaatgacgtccatcttctccctaatgcattggagagcagcttcagtgcaaagagcagcaaggtcagcaccaacatacccatg |
100 |
Q |
| |
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|||||||| || |||||||| |||||||| || ||||| |||||||| || || ||||| || || | |||||| | |||||||||||||| ||||| |
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| T |
41092443 |
gtctcatcttccaagtcaatcacgtccattttttccctgatgcattgaagtgctgcttcggtacacaaagcagctaaatcagcaccaacatagccatg |
41092540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 452
Target Start/End: Complemental strand, 27977635 - 27977508
Alignment:
| Q |
325 |
agcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatctaccaaaccttctca |
424 |
Q |
| |
|
|||||||| ||||| ||||| ||||| || || ||||| || |||| ||||||||| ||||||||||| || |||| |||||| || |||||||| | | |
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| T |
27977635 |
agcttcatattttttgtatggatgcggagaacctcaagacgtccaacttcatctggtacaccaatatcaatctcccgatcaaaccttccaaacctccgaa |
27977536 |
T |
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| Q |
425 |
atgccgggtcaatgctattggggcgatt |
452 |
Q |
| |
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|| ||||| ||||||||||| ||||| |
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| T |
27977535 |
gagcagggtcgatgctattgggacgatt |
27977508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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