View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7878_low_3 (Length: 259)
Name: NF7878_low_3
Description: NF7878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7878_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 259
Target Start/End: Original strand, 50386228 - 50386480
Alignment:
| Q |
7 |
cttcctagccacagaaaagaataacaatgcctctaaaaacctattcaccaacaaatgcaactatttcaatctcacctcactcatcatatttctccatcca |
106 |
Q |
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| T |
50386228 |
cttcctagccacagaaaagaataacaatgcctctaaaaacctattcaccaacaaatgcaactatttcaatttcacctcactcatcatatttctccatcca |
50386327 |
T |
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| Q |
107 |
ccaactagtttcccaacaaaccacatttctaagaaggatgtcaaaattgacaagataagtatagaccaagcaatttccttctacacaagaatcttgaaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50386328 |
ccaactagtttcccaacaaaccacatttctaagaaggatgtcaaaattgacaagataagtatagaccaagcaatttccttctacacaagaatcttgaaaa |
50386427 |
T |
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| Q |
207 |
ccaaagagttgtatccattagatatggacattattctcaaagaaaaactcagc |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50386428 |
ccaaagagttgtatccattagatatggacattattctcaaagaaaaactcagc |
50386480 |
T |
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