View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7878_low_6 (Length: 244)

Name: NF7878_low_6
Description: NF7878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7878_low_6
NF7878_low_6
[»] chr7 (14 HSPs)
chr7 (12-138)||(6865584-6865710)
chr7 (138-244)||(35378-35484)
chr7 (138-244)||(44313-44419)
chr7 (139-244)||(1049708-1049813)
chr7 (139-244)||(3878322-3878427)
chr7 (139-244)||(25542281-25542385)
chr7 (139-238)||(18567363-18567462)
chr7 (138-244)||(26804344-26804450)
chr7 (139-238)||(31435487-31435586)
chr7 (139-244)||(27306663-27306767)
chr7 (138-215)||(1047428-1047504)
chr7 (20-138)||(661389-661508)
chr7 (139-244)||(40837156-40837261)
chr7 (80-130)||(22087824-22087874)
[»] chr3 (24 HSPs)
chr3 (139-244)||(1321161-1321266)
chr3 (138-244)||(26720267-26720373)
chr3 (139-243)||(11162891-11162995)
chr3 (138-244)||(5523047-5523153)
chr3 (138-244)||(11170144-11170250)
chr3 (138-229)||(32218835-32218926)
chr3 (138-244)||(10956459-10956564)
chr3 (140-244)||(5191374-5191478)
chr3 (138-244)||(18099602-18099708)
chr3 (138-244)||(18097317-18097423)
chr3 (139-229)||(48362096-48362186)
chr3 (139-242)||(24176999-24177102)
chr3 (139-217)||(32264503-32264580)
chr3 (138-215)||(38210066-38210142)
chr3 (139-215)||(53896679-53896754)
chr3 (138-243)||(22114738-22114843)
chr3 (170-244)||(10192425-10192498)
chr3 (139-215)||(35777163-35777238)
chr3 (139-215)||(50493676-50493751)
chr3 (138-217)||(7606886-7606964)
chr3 (170-244)||(10085505-10085578)
chr3 (172-244)||(6719544-6719618)
chr3 (139-184)||(18162405-18162450)
chr3 (139-184)||(45882659-45882704)
[»] chr2 (12 HSPs)
chr2 (139-244)||(42064231-42064336)
chr2 (138-244)||(21521129-21521235)
chr2 (138-238)||(40032487-40032587)
chr2 (142-244)||(6259249-6259351)
chr2 (138-244)||(43623980-43624086)
chr2 (138-243)||(18800715-18800820)
chr2 (144-244)||(6264558-6264658)
chr2 (139-229)||(22407858-22407948)
chr2 (138-244)||(24162646-24162753)
chr2 (138-244)||(27104514-27104620)
chr2 (138-244)||(19502445-19502551)
chr2 (139-215)||(45332600-45332675)
[»] chr4 (29 HSPs)
chr4 (139-244)||(9148054-9148159)
chr4 (139-244)||(31850033-31850138)
chr4 (142-244)||(5198217-5198319)
chr4 (138-244)||(38408992-38409098)
chr4 (138-244)||(36920021-36920126)
chr4 (138-244)||(22044823-22044931)
chr4 (143-244)||(24888594-24888695)
chr4 (138-244)||(3825007-3825113)
chr4 (139-244)||(5637902-5638006)
chr4 (138-238)||(48486112-48486212)
chr4 (139-244)||(36921929-36922033)
chr4 (138-217)||(22048498-22048576)
chr4 (137-244)||(18846921-18847030)
chr4 (171-244)||(22803167-22803240)
chr4 (144-229)||(52942917-52943002)
chr4 (139-243)||(7941133-7941238)
chr4 (138-244)||(9174580-9174685)
chr4 (138-244)||(11006675-11006782)
chr4 (138-215)||(16932285-16932361)
chr4 (171-244)||(22801274-22801347)
chr4 (139-244)||(11434769-11434875)
chr4 (139-215)||(16934639-16934714)
chr4 (141-217)||(40091876-40091952)
chr4 (139-244)||(9176930-9177035)
chr4 (139-229)||(619896-619986)
chr4 (138-215)||(22780877-22780953)
chr4 (139-215)||(22783242-22783317)
chr4 (77-131)||(53773990-53774044)
chr4 (141-243)||(51015042-51015144)
[»] chr1 (26 HSPs)
chr1 (139-244)||(15823286-15823391)
chr1 (137-240)||(10400268-10400371)
chr1 (139-243)||(28840418-28840522)
chr1 (138-244)||(28842232-28842338)
chr1 (141-217)||(38925920-38925996)
chr1 (139-230)||(47451405-47451496)
chr1 (139-238)||(49687301-49687400)
chr1 (138-244)||(3580054-3580160)
chr1 (138-244)||(6822774-6822881)
chr1 (139-229)||(39462258-39462348)
chr1 (138-244)||(13761576-13761682)
chr1 (138-215)||(47179427-47179503)
chr1 (138-244)||(51752103-51752210)
chr1 (139-244)||(51749778-51749884)
chr1 (138-244)||(47177077-47177182)
chr1 (172-238)||(13214854-13214920)
chr1 (139-184)||(13461347-13461392)
chr1 (138-206)||(14098443-14098511)
chr1 (136-215)||(16225884-16225962)
chr1 (139-184)||(41646681-41646726)
chr1 (171-215)||(16231373-16231416)
chr1 (139-244)||(20291280-20291386)
chr1 (196-229)||(28207517-28207550)
chr1 (171-244)||(6823655-6823729)
chr1 (144-184)||(28207541-28207581)
chr1 (138-242)||(30790832-30790936)
[»] chr8 (13 HSPs)
chr8 (143-244)||(28252021-28252122)
chr8 (139-244)||(4423835-4423940)
chr8 (138-244)||(27826781-27826887)
chr8 (138-244)||(27829092-27829198)
chr8 (139-244)||(12517460-12517565)
chr8 (143-244)||(14807552-14807653)
chr8 (138-244)||(15072505-15072611)
chr8 (138-244)||(15067776-15067882)
chr8 (138-244)||(44720616-44720723)
chr8 (139-243)||(18810483-18810587)
chr8 (138-244)||(18812667-18812773)
chr8 (138-215)||(43079346-43079422)
chr8 (138-215)||(43081721-43081797)
[»] chr6 (13 HSPs)
chr6 (139-241)||(15530559-15530661)
chr6 (139-244)||(8995255-8995360)
chr6 (139-244)||(9019702-9019807)
chr6 (138-244)||(19227843-19227949)
chr6 (139-229)||(1072305-1072395)
chr6 (139-217)||(32279794-32279871)
chr6 (139-217)||(14507639-14507716)
chr6 (138-215)||(33308684-33308760)
chr6 (138-215)||(33310953-33311029)
chr6 (196-244)||(4816701-4816749)
chr6 (138-184)||(15533175-15533221)
chr6 (139-184)||(15541634-15541679)
chr6 (139-215)||(26068807-26068882)
[»] scaffold0250 (1 HSPs)
scaffold0250 (138-244)||(2628-2734)
[»] chr5 (20 HSPs)
chr5 (139-244)||(16775897-16776002)
chr5 (139-244)||(38881845-38881950)
chr5 (138-244)||(659712-659817)
chr5 (138-229)||(20504362-20504453)
chr5 (138-226)||(21947769-21947857)
chr5 (139-229)||(18186497-18186587)
chr5 (143-244)||(4236374-4236475)
chr5 (139-229)||(20507911-20508001)
chr5 (138-244)||(31466391-31466497)
chr5 (138-238)||(12556342-12556442)
chr5 (139-238)||(2818747-2818847)
chr5 (138-244)||(34477527-34477633)
chr5 (138-244)||(34479867-34479973)
chr5 (139-244)||(25921886-25921992)
chr5 (136-203)||(21684905-21684972)
chr5 (139-244)||(2174680-2174785)
chr5 (139-244)||(39797849-39797954)
chr5 (194-244)||(659880-659929)
chr5 (141-238)||(6756257-6756354)
chr5 (139-179)||(661246-661286)
[»] scaffold0025 (2 HSPs)
scaffold0025 (138-244)||(69728-69834)
scaffold0025 (138-243)||(73440-73545)
[»] scaffold0131 (1 HSPs)
scaffold0131 (140-240)||(14768-14869)
[»] scaffold0068 (1 HSPs)
scaffold0068 (136-203)||(28938-29005)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 6865710 - 6865584
Alignment:
Q  12 catcatcagtattcctccctgacgaactcatcgttgaagtgctatcatggcttaccgtaaaacaacttatgcgactgaagtatgtgagtaagtcatggaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6865710 catcatcagtattcctccctgacgaactcatcgttgaagtgctatcatggcttaccgtaaaacaacttatgcgactgaagtatgtgagtaagtcatggaa 6865611  T
Q  112 gtccctcatctccgaacccacctttgt 138  Q
    |||||||||||||||||||||||||||    
T  6865610 gtccctcatctccgaacccacctttgt 6865584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 35378 - 35484
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35378 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgattgctaggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 35477  T
Q  238 aaaaatc 244  Q
    |||||||    
T  35478 aaaaatc 35484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 44313 - 44419
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  44313 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgatttctgggcaatgtggcacgattggaggtttcaagtttgacgcaaagcactgg 44412  T
Q  238 aaaaatc 244  Q
    |||||||    
T  44413 aaaaatc 44419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 1049813 - 1049708
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||| |||| | ||||||    
T  1049813 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgattgctgggcaacgtggcacgattggaggtttcagttttgaagcaaggtactgga 1049714  T
Q  239 aaaatc 244  Q
    ||||||    
T  1049713 aaaatc 1049708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 3878322 - 3878427
Alignment:
Q  139 tgtgagagttaacttaaaatca-agatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    |||||||||||||||||||||| |  ||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3878322 tgtgagagttaacttaaaatcagatttctgcag-aatcgtggcacgatggctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 3878420  T
Q  238 aaaaatc 244  Q
    |||||||    
T  3878421 aaaaatc 3878427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 25542281 - 25542385
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||  ||| |||||| ||||| ||    
T  25542281 tgtgagagttaacttaaaatcaagatctgcaggaat-gtggcacgattgctgggcaacgtggcacgattggaggtttcagttttaaggcaaggcacttga 25542379  T
Q  239 aaaatc 244  Q
    ||||||    
T  25542380 aaaatc 25542385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 18567363 - 18567462
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||| ||||||||||| | ||| ||| |||||||||||||  ||||||||| |||||||||||||||||||||  ||||||||||  |||||||    
T  18567363 tgtgagagttgacttaaaatcaggttctacagaaatcgtggcacgatagctgggcaaagtggcacgattggaggtttcagttttgaggcaagtcactgga 18567462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 26804344 - 26804450
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactg 236  Q
    ||||||||||||||||||||||| | | || ||| |||||||||||||  |||||||||||||| ||||||||||||||||  |||||||||| ||| ||    
T  26804344 ttgtgagagttaacttaaaatcaggtttctacag-aatcgtggcacgatggctgggcaacgtggtacgattggaggtttcagttttgaggcaaggcagtg 26804442  T
Q  237 gaaaaatc 244  Q
    ||||||||    
T  26804443 gaaaaatc 26804450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 31435586 - 31435487
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||| ||||||||||| | ||| ||| |||||||||||||  ||||||||| |||||||||||||||||||||  ||||||||||  |||||||    
T  31435586 tgtgagagttgacttaaaatcaggttctacagaaatcgtggcacgatagctgggcaaagtggcacgattggaggtttcagttttgaggcaagtcactgga 31435487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 27306767 - 27306663
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||||||||||||| | | | ||||  |||||||||||||  ||||| |||||||||||||||||||||||||  ||||||||||  || ||||    
T  27306767 tgtgagagttaacttaaaataaggttttgcaa-aatcgtggcacgatggctggacaacgtggcacgattggaggtttcagttttgaggcaagtcattgga 27306669  T
Q  239 aaaatc 244  Q
    ||||||    
T  27306668 aaaatc 27306663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 1047504 - 1047428
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    ||||||||||||||||||||||| | | |||||| |||||||||||||| ||||||||||||||||||| |||||||||    
T  1047504 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggctgggcaacgtggcacga-tggaggttt 1047428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 661508 - 661389
Alignment:
Q  20 gtattcctccc-tgacgaactcatcgttgaagtgctatcatggcttaccgtaaaacaacttatgcgactgaagtatgtgagtaagtcatggaagtccctc 118  Q
    ||||||||||| ||||||||| |||| ||||||||| || |  |||   ||||||| ||| |||| ||||||||   ||||||||||||||||  | |||    
T  661508 gtattcctcccctgacgaacttatcgctgaagtgctttccttccttcaagtaaaaccactgatgctactgaagtgcatgagtaagtcatggaatactctc 661409  T
Q  119 atctccgaacccacctttgt 138  Q
    ||||| ||||||||||||||    
T  661408 atctcggaacccacctttgt 661389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 40837261 - 40837156
Alignment:
Q  139 tgtgagagttaacttaaaatcaag-atctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcactg 236  Q
    |||||||||||||||||||||| |  |||||| ||||||||||||||  |  || ||||||||||||| |||||||||||   ||| |||||| ||||||    
T  40837261 tgtgagagttaacttaaaatcaggtttctgca-gaatcgtggcacgatggtcggacaacgtggcacga-tggaggtttcagttttttaggcaaggcactg 40837164  T
Q  237 gaaaaatc 244  Q
    ||||||||    
T  40837163 gaaaaatc 40837156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 22087824 - 22087874
Alignment:
Q  80 atgcgactgaagtatgtgagtaagtcatggaagtccctcatctccgaaccc 130  Q
    ||||| ||||||| | |||||||||||||||||| |||||| |||||||||    
T  22087824 atgcggctgaagtgtttgagtaagtcatggaagtacctcatgtccgaaccc 22087874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 1321161 - 1321266
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  1321161 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgattgctgggcaacgtggcacgattagaggtttcaagtttgaggcaaagcactgaa 1321260  T
Q  239 aaaatc 244  Q
    ||||||    
T  1321261 aaaatc 1321266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 26720267 - 26720373
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||  |||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  26720267 ttgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgatggctgagcaacgtggcaggattggaggtttcaagtttgaggcaaagcactgg 26720366  T
Q  238 aaaaatc 244  Q
    |||||||    
T  26720367 aaaaatc 26720373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 11162891 - 11162995
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcactgg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||   |||||||||| |||||||    
T  11162891 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgattgctgggcaacgtggcacga-tggaggtttcagtttttgaggcaaggcactgg 11162989  T
Q  238 aaaaat 243  Q
    ||||||    
T  11162990 aaaaat 11162995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 5523153 - 5523047
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    |||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||||||| |||||||  |||||||||| | |||||    
T  5523153 ttgtgagagttaacttaaaatcaagatctggaggaatcgtggcaagattgctgggcaacatggcacgattggtggtttcagttttgaggcaaggtactgg 5523054  T
Q  238 aaaaatc 244  Q
    |||||||    
T  5523053 aaaaatc 5523047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 11170144 - 11170250
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttc-aagtttgaggcaaagcactg 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||    |||||||||| ||||||    
T  11170144 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacggttgctgggcaacgtggcacga-tggaggtttcggtttttgaggcaaggcactg 11170242  T
Q  237 gaaaaatc 244  Q
    ||||||||    
T  11170243 gaaaaatc 11170250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 32218835 - 32218926
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaa 229  Q
    ||||||||||||||||||||||| | ||||||| |||||||||||||    |||||||||||||||||||||||||||||| ||||||||||    
T  32218835 ttgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatgattgggcaacgtggcacgattggaggtttcaactttgaggcaa 32218926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 10956564 - 10956459
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |  ||||| || | ||||||||||||||||||||  |||| ||||| |||||||    
T  10956564 ttgtgagagttaacttaaaatcaggatctgcaggaatcgtggcac-atggctggacatcatggcacgattggaggtttcagttttggggcaaggcactgg 10956466  T
Q  238 aaaaatc 244  Q
    |||||||    
T  10956465 aaaaatc 10956459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 5191374 - 5191478
Alignment:
Q  140 gtgagagttaacttaaaatca-agatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    ||||||||||||||||||||| |  ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||  |||||||||| | ||||||    
T  5191374 gtgagagttaacttaaaatcagatttctgcag-aatcgtggcacgattgctgggcatcgtggcacgattggaggtttcagttttgaggcaaggtactgga 5191472  T
Q  239 aaaatc 244  Q
    ||||||    
T  5191473 aaaatc 5191478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 18099708 - 18099602
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactg 236  Q
    ||||||||||||||||||||||| | | |||||  |||||||||||||  |||||||||||||||||||||||||||||||  ||||||||||  |||||    
T  18099708 ttgtgagagttaacttaaaatcaggtttctgcaa-aatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagttttgaggcaagacactg 18099610  T
Q  237 gaaaaatc 244  Q
    ||||||||    
T  18099609 gaaaaatc 18099602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 18097423 - 18097317
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactg 236  Q
    ||||||||||||||||||||||| | | |||||  |||||||||||||  |||||||||||||||||||||||||||||||  |||||||||| |||  |    
T  18097423 ttgtgagagttaacttaaaatcaggtttctgcaa-aatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagttttgaggcaaggcatag 18097325  T
Q  237 gaaaaatc 244  Q
    ||||||||    
T  18097324 gaaaaatc 18097317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 48362186 - 48362096
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaa 229  Q
    |||||||||||||||||||||| | |||| || |||||||||||||  | |||||||||||||||||||||| ||||||  ||||||||||    
T  48362186 tgtgagagttaacttaaaatcaggttctgtagaaatcgtggcacgatggttgggcaacgtggcacgattggaagtttcagttttgaggcaa 48362096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 24176999 - 24177102
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||||||||||||||||| |||| || ||||||||||||  ||| ||||||||||||||||||||  ||||||  | ||| ||||  |||||||    
T  24176999 tgtgagagttaacttaaaatcaagttctggagaaatcgtggcacgtttgcagggcaacgtggcacgattggttgtttcagttctgaagcaagtcactgga 24177098  T
Q  239 aaaa 242  Q
    ||||    
T  24177099 aaaa 24177102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 32264580 - 32264503
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca 217  Q
    |||||||||||||||||||||| | | ||||| |||||||||||||  |||||| ||||||||||||||||||||||||    
T  32264580 tgtgagagttaacttaaaatcaggttttgcagaaatcgtggcacgatggctggg-aacgtggcacgattggaggtttca 32264503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 38210066 - 38210142
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    ||||||||||||||||||||||| | | |||||| |||||||||||||| ||||||||||||||||||| |||||||||    
T  38210066 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggctgggcaacgtggcacga-tggaggttt 38210142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 53896754 - 53896679
Alignment:
Q  139 tgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    |||||||||||||||||||||| | | |||||| ||||||||||||| |||||||||||||||||||| |||||||||    
T  53896754 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgattgctgggcaacgtggcacga-tggaggttt 53896679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 22114843 - 22114738
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcact 235  Q
    ||||||||||||||||||||||| | | ||| || |||||||||||||  | ||||||||||||||||| |||||||||||   |||||||||| |||||    
T  22114843 ttgtgagagttaacttaaaatcaggtttctgtag-aatcgtggcacgatggttgggcaacgtggcacga-tggaggtttcagtttttgaggcaaggcact 22114746  T
Q  236 ggaaaaat 243  Q
    ||||||||    
T  22114745 ggaaaaat 22114738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 244
Target Start/End: Complemental strand, 10192498 - 10192425
Alignment:
Q  170 ggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactggaaaaatc 244  Q
    |||||||||||||||  ||  |||||||||||||||| ||||||||||  |||||||||| ||||||||||||||    
T  10192498 ggaatcgtggcacgatcgcaaggcaacgtggcacgat-ggaggtttcagttttgaggcaaggcactggaaaaatc 10192425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 35777163 - 35777238
Alignment:
Q  139 tgtgagagttaacttaaaatca-agatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    |||||||||||||||||||| | |  ||||||| |||||||||||||| ||||||||||||||||||| |||||||||    
T  35777163 tgtgagagttaacttaaaattagatttctgcag-aatcgtggcacgacagctgggcaacgtggcacga-tggaggttt 35777238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 50493676 - 50493751
Alignment:
Q  139 tgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    |||||||||||||||||||||| | | |||||| |||||||||||||  ||||||||||||||||||| |||||||||    
T  50493676 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatagctgggcaacgtggcacga-tggaggttt 50493751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 7606964 - 7606886
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca 217  Q
    ||||||||||||||||||||||| | | |||||| ||||||| |||||  ||||||||||||||||||| |||||||||||    
T  7606964 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtgacacgatggctgggcaacgtggcacga-tggaggtttca 7606886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 244
Target Start/End: Complemental strand, 10085578 - 10085505
Alignment:
Q  170 ggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactggaaaaatc 244  Q
    |||||||||||| ||  ||  |||||||||||||||| ||||||||||  |||||||||| ||||||||||||||    
T  10085578 ggaatcgtggcatgatcgcaaggcaacgtggcacgat-ggaggtttcagttttgaggcaaggcactggaaaaatc 10085505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 6719618 - 6719544
Alignment:
Q  172 aatcgtggcacgactgctgggcaacgtggcacgattg--gaggtttcaagtttgaggcaaagcactggaaaaatc 244  Q
    ||||||||||||| ||  ||||| |||||||||||||  |||||||||  ||| |||||| ||||||||||||||    
T  6719618 aatcgtggcacgattgaagggcatcgtggcacgattggagaggtttcagtttttaggcaatgcactggaaaaatc 6719544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 18162405 - 18162450
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacga 184  Q
    |||||||||||||||||||||| ||||||||  ||||||| |||||    
T  18162405 tgtgagagttaacttaaaatcaggatctgcataaatcgtgccacga 18162450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 45882659 - 45882704
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacga 184  Q
    |||||||||||||||||||||| ||||||||  ||||||| |||||    
T  45882659 tgtgagagttaacttaaaatcaggatctgcaaaaatcgtgccacga 45882704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 42064231 - 42064336
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  42064231 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgattgctgggcaacgtggtacgactggaggtttcaagtttgaggcaaagcactgga 42064330  T
Q  239 aaaatc 244  Q
    ||||||    
T  42064331 aaaatc 42064336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 21521235 - 21521129
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    ||||||||||||||||||||||| | ||| |||||||||||||||||  |||||||||||||||||||||||||||||||  ||||| ||||  ||||||    
T  21521235 ttgtgagagttaacttaaaatcaggttctacaggaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagttttgaagcaagccactgg 21521136  T
Q  238 aaaaatc 244  Q
    |||||||    
T  21521135 aaaaatc 21521129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 40032587 - 40032487
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    ||||||||||||||||||||||| | ||||||| |||||||||||||  |||||||||||||||||||||||||||||||  |||||| |||  ||||||    
T  40032587 ttgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagttttgagacaagtcactgg 40032488  T
Q  238 a 238  Q
    |    
T  40032487 a 40032487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 6259351 - 6259249
Alignment:
Q  142 gagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactggaaaa 241  Q
    ||||||||||||||||||| | ||||||| |||||||||||||  |||| |||||||||||| |||||| ||||||  ||||||| ||  ||||||||||    
T  6259351 gagagttaacttaaaatcaggttctgcagaaatcgtggcacgatggctgtgcaacgtggcactattggatgtttcagttttgaggaaagtcactggaaaa 6259252  T
Q  242 atc 244  Q
    |||    
T  6259251 atc 6259249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 43624086 - 43623980
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactg 236  Q
    |||||| |||||||||||||||| | | |||||| |||| ||||||||  |||||||||| ||||||||||||||||||||  |||||||||| ||||||    
T  43624086 ttgtgaaagttaacttaaaatcaggtttctgcag-aatcatggcacgatggctgggcaacatggcacgattggaggtttcagttttgaggcaaggcactg 43623988  T
Q  237 gaaaaatc 244  Q
     |||||||    
T  43623987 aaaaaatc 43623980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 18800820 - 18800715
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    ||||||||||||||||||||||| | |||| || ||||||||||||  || ||||||||||| |||||||||| ||||||  | ||| ||||  ||||||    
T  18800820 ttgtgagagttaacttaaaatcatgttctggagaaatcgtggcacgtttgttgggcaacgtgacacgattggatgtttcagttatgaagcaagtcactgg 18800721  T
Q  238 aaaaat 243  Q
    ||||||    
T  18800720 aaaaat 18800715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 6264658 - 6264558
Alignment:
Q  144 gagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactggaaaaat 243  Q
    ||||||||||||||||| | ||||||| ||| || ||||||  | |||||||||||||| ||||||| ||||||  ||||||||||  ||||||||||||    
T  6264658 gagttaacttaaaatcaggttctgcagaaattgttgcacgatggttgggcaacgtggcatgattggatgtttcagttttgaggcaagtcactggaaaaat 6264559  T
Q  244 c 244  Q
    |    
T  6264558 c 6264558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 22407948 - 22407858
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaa 229  Q
    |||||||||||| ||||||| | | ||||||||||||||||||||| ||  ||| ||| ||||||||||||| ||||||  ||||||||||    
T  22407948 tgtgagagttaatttaaaattaggttctgcaggaatcgtggcacgattgaagggtaacatggcacgattggatgtttcagttttgaggcaa 22407858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 24162753 - 24162646
Alignment:
Q  138 ttgtgagagttaacttaaaatcaag-atctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca--agtttgaggcaaagcac 234  Q
    |||||||||||||||||||||||||  |||||| |||||||||||| |  | ||||||||||||||||| |||||||||||    |||||||||| ||||    
T  24162753 ttgtgagagttaacttaaaatcaagtttctgca-gaatcgtggcacaatggttgggcaacgtggcacga-tggaggtttcagttttttgaggcaaggcac 24162656  T
Q  235 tggaaaaatc 244  Q
    ||||||||||    
T  24162655 tggaaaaatc 24162646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 27104514 - 27104620
Alignment:
Q  138 ttgtgagagttaacttaaaatca-agatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcact 235  Q
    |||| |||||||||||||||||| |  ||||||| ||||||||||||| ||  |||||||||||||||| |||||||||||   |||||||||| |||||    
T  27104514 ttgtaagagttaacttaaaatcagatttctgcag-aatcgtggcacgattgaagggcaacgtggcacga-tggaggtttcagtttttgaggcaaggcact 27104611  T
Q  236 ggaaaaatc 244  Q
    |||||||||    
T  27104612 ggaaaaatc 27104620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 19502551 - 19502445
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcact 235  Q
    |||||| |||||||||||||||| | | |||||| |||||||||||||  ||  ||||||||||||||| |||||||||||   ||| |||||| |||||    
T  19502551 ttgtgatagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagttttttaggcaaggcact 19502454  T
Q  236 ggaaaaatc 244  Q
    |||||||||    
T  19502453 ggaaaaatc 19502445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 45332675 - 45332600
Alignment:
Q  139 tgtgagagttaacttaaaatcaag-atctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    |||||||||||||||||||||| |  |||||| ||||||||||||||| |||||||  || ||||||| |||||||||    
T  45332675 tgtgagagttaacttaaaatcaggtttctgca-gaatcgtggcacgacggctgggcttcgcggcacga-tggaggttt 45332600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 9148054 - 9148159
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9148054 tgtgagagttaacttaaaatcaagatcttcaggaatcgtggtacgattgctgggcaacgtggcgcgattggaggtttcaagtttgaggcaaagcactgga 9148153  T
Q  239 aaaatc 244  Q
    ||||||    
T  9148154 aaaatc 9148159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 31850138 - 31850033
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||  |||| ||||| ||||||||    
T  31850138 tgtgagagttaacttaaaatcaagatctgcaggaattgtggcacgattgctgggcaacgtggcacgattggaggtttcagttttggggcaaggcactgga 31850039  T
Q  239 aaaatc 244  Q
    ||||||    
T  31850038 aaaatc 31850033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 5198217 - 5198319
Alignment:
Q  142 gagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactggaaaa 241  Q
    |||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  5198217 gagagttaacttaaaatcaagatctgcaggaatcatgacatgattgctgggcaacgtggcacgattggagatttcaagtttgaggcaaagctctggaaaa 5198316  T
Q  242 atc 244  Q
    |||    
T  5198317 atc 5198319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 38408992 - 38409098
Alignment:
Q  138 ttgtgagagttaacttaaaatca-agatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactg 236  Q
    ||||||||||||||||||||| | |  ||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38408992 ttgtgagagttaacttaaaattagatttctgcag-aatcgtggcacgattgctgggcatcgtggcacgattggaggtttcaagtttgaggcaaagcactg 38409090  T
Q  237 gaaaaatc 244  Q
    ||||||||    
T  38409091 gaaaaatc 38409098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 36920126 - 36920021
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    ||||||||||||||||||||||| | ||||||  |||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||  ||||||    
T  36920126 ttgtgagagttaacttaaaatcaggttctgcaa-aatcgtggcacgatggctgggcaacgtggcacgattggaggtttcaattttgaggcaagtcactgg 36920028  T
Q  238 aaaaatc 244  Q
    |||||||    
T  36920027 aaaaatc 36920021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 22044931 - 22044823
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca---agtttgaggcaaagcac 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||| |||||||||||     |||||||||| ||||    
T  22044931 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgattgaagggcaacgtggcacga-tggaggtttcattttttttgaggcaaggcac 22044833  T
Q  235 tggaaaaatc 244  Q
    ||||||||||    
T  22044832 tggaaaaatc 22044823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 24888594 - 24888695
Alignment:
Q  143 agagttaacttaaaatca-agatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactggaaaa 241  Q
    |||||||||||||||||| |  ||||||| ||| |||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24888594 agagttaacttaaaatcagatttctgcag-aattgtggcacgatggctaggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactggaaaa 24888692  T
Q  242 atc 244  Q
    |||    
T  24888693 atc 24888695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 3825113 - 3825007
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactg 236  Q
    ||||||||||||||||||||||| | | |||||| ||||||| |||||  |||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  3825113 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtgacacgatggctgggcaacatggcacgattggaggtttcagttttgaggcaaagcactg 3825015  T
Q  237 gaaaaatc 244  Q
    ||||||||    
T  3825014 gaaaaatc 3825007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 5638006 - 5637902
Alignment:
Q  139 tgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    |||||||||||||||||||||| | | |||| ||||||||||||||| |||||||||||||||||||| |||||||||||  |||||||||| |||||||    
T  5638006 tgtgagagttaacttaaaatcaggtttctgc-ggaatcgtggcacgattgctgggcaacgtggcacga-tggaggtttcagttttgaggcaaggcactgg 5637909  T
Q  238 aaaaatc 244  Q
    |||||||    
T  5637908 aaaaatc 5637902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 48486112 - 48486212
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    ||||||||||||||||||||||| |  |||||| |||||||||||||  |||| ||||||||||||||||||||||||||  ||||||||||  ||||||    
T  48486112 ttgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatggctgagcaacgtggcacgattggaggtttcagttttgaggcaagtcactgg 48486211  T
Q  238 a 238  Q
    |    
T  48486212 a 48486212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 36922033 - 36921929
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||||||||||||||| | ||||||  |||||||| ||||  |||||||||| ||||||||||||||||||||  ||||||||||  |||||||    
T  36922033 tgtgagagttaacttaaaatcaggttctgcaa-aatcgtggtacgatggctgggcaacatggcacgattggaggtttcagttttgaggcaagtcactgga 36921935  T
Q  239 aaaatc 244  Q
    ||||||    
T  36921934 aaaatc 36921929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 22048576 - 22048498
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca 217  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||| ||  |||||||||||||||| |||||||||||    
T  22048576 ttgtgagagttaacttaaaatcaagatccgcaagaatcgtggcacgattgaagggcaacgtggcacga-tggaggtttca 22048498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 244
Target Start/End: Original strand, 18846921 - 18847030
Alignment:
Q  137 gttgtgagagttaacttaaaatcaagat----ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagc 232  Q
    |||||||||||||||||||||||| |||    |||||| ||||||||||||| || |||| | ||||||||||||||||||||||  |||||||||| |     
T  18846921 gttgtgagagttaacttaaaatca-gatttttctgcag-aatcgtggcacgattgttgggaatcgtggcacgattggaggtttcagttttgaggcaaggt 18847018  T
Q  233 actggaaaaatc 244  Q
    ||||||||||||    
T  18847019 actggaaaaatc 18847030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 22803240 - 22803167
Alignment:
Q  171 gaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactggaaaaatc 244  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||||  ||||||| || ||||||||||||||    
T  22803240 gaatcgtggtacgatggctgggcaacgtggcacgattggaggtttcagttttgaggaaaggcactggaaaaatc 22803167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 52943002 - 52942917
Alignment:
Q  144 gagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaa 229  Q
    ||||||||||||||||| | | ||||  |||||||||||||  | |||||||||||||||||||||||||||||  ||||||||||    
T  52943002 gagttaacttaaaatcaggttttgcaaaaatcgtggcacgatggttgggcaacgtggcacgattggaggtttcagctttgaggcaa 52942917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 7941133 - 7941238
Alignment:
Q  139 tgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca--agtttgaggcaaagcact 235  Q
    |||||||||||||||||||||| | | |||||| |||||||||||||  ||||||||||||||||||| |||||||||||    |||||||||| |||||    
T  7941133 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggctgggcaacgtggcacga-tggaggtttcagttttttgaggcaaggcact 7941230  T
Q  236 ggaaaaat 243  Q
    ||||||||    
T  7941231 ggaaaaat 7941238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 9174685 - 9174580
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtt-tgaggcaaagcactg 236  Q
    ||||||||||||||||||||||| | |||||| ||||||||||||||| ||| |||||||| |||||| ||||||||| |  || | |||||| ||||||    
T  9174685 ttgtgagagttaacttaaaatcaggttctgca-gaatcgtggcacgacggctaggcaacgtagcacga-tggaggttttagtttattaggcaaggcactg 9174588  T
Q  237 gaaaaatc 244  Q
    ||||||||    
T  9174587 gaaaaatc 9174580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 11006782 - 11006675
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatct--gcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaa-gtttgaggcaaagcac 234  Q
    ||||||||||||||||||||||| | | |  |||| |||||||||||||  ||||||||||||||||||| ||||||||||||  ||| |||||| ||||    
T  11006782 ttgtgagagttaacttaaaatcaggttttatgcag-aatcgtggcacgatcgctgggcaacgtggcacga-tggaggtttcaattttttaggcaaggcac 11006685  T
Q  235 tggaaaaatc 244  Q
    ||||||||||    
T  11006684 tggaaaaatc 11006675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 16932361 - 16932285
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    ||||||||||||||||||||||| | | |||||| |||||||||||||| ||||||||||||||||||| |||||||||    
T  16932361 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggctgggcaacgtggcacga-tggaggttt 16932285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 22801347 - 22801274
Alignment:
Q  171 gaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactggaaaaatc 244  Q
    ||||||||||||||  | ||||||||||| |||||||||||||||||  |||||||||| | ||||||||||||    
T  22801347 gaatcgtggcacgatggttgggcaacgtgacacgattggaggtttcagttttgaggcaaggaactggaaaaatc 22801274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 11434769 - 11434875
Alignment:
Q  139 tgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca--agtttgaggcaaagcact 235  Q
    |||||||||||||||||||||| | | |||||| |||||||| ||||  ||||||||||||||||||| |||||||||||    ||||||||||  ||||    
T  11434769 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggtacgatggctgggcaacgtggcacga-tggaggtttcagttttttgaggcaagacact 11434866  T
Q  236 ggaaaaatc 244  Q
    |||||||||    
T  11434867 ggaaaaatc 11434875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 16934714 - 16934639
Alignment:
Q  139 tgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    |||||||||||||||||||||| | | |||||| |||||||||||||| |||||||||| |||||||| |||||||||    
T  16934714 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggctgggcaacatggcacga-tggaggttt 16934639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 40091952 - 40091876
Alignment:
Q  141 tgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca 217  Q
    |||||||||||||||||||| | ||||||  ||||||||||||   | |||| |||||||||||||||||| |||||    
T  40091952 tgagagttaacttaaaatcaggttctgcaataatcgtggcacggtggttgggtaacgtggcacgattggagatttca 40091876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 9177035 - 9176930
Alignment:
Q  139 tgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcactg 236  Q
    |||||||||||||||||||||| | | |||||| |||||||||||||| | | ||||||||||||||| ||||||||| |   ||| |||||| ||||||    
T  9177035 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggttaggcaacgtggcacga-tggaggttttagttttttaggcaaggcactg 9176938  T
Q  237 gaaaaatc 244  Q
    ||||||||    
T  9176937 gaaaaatc 9176930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 619986 - 619896
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaa 229  Q
    |||||||||||||||||||||| | | || |||||| || |||||| ||  || ||||||||||| |||||| ||||||  ||||||||||    
T  619986 tgtgagagttaacttaaaatcaggttatgtaggaattgtcgcacgattgaaggtcaacgtggcacaattggatgtttcagttttgaggcaa 619896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 22780953 - 22780877
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    ||||||||||||||||||||||| | | |||||| |||||||| ||||  ||||||||||||||||||| |||||||||    
T  22780953 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggtacgatagctgggcaacgtggcacga-tggaggttt 22780877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 22783317 - 22783242
Alignment:
Q  139 tgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    |||||||||||||||||||||| | | |||||| |||||||| ||||  ||||||||||||||||||| |||||||||    
T  22783317 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggtacgatagctgggcaacgtggcacga-tggaggttt 22783242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 53773990 - 53774044
Alignment:
Q  77 cttatgcgactgaagtatgtgagtaagtcatggaagtccctcatctccgaaccca 131  Q
    ||||||| |||||||| |||||||||| |||||||  ||||||||||||| ||||    
T  53773990 cttatgctactgaagtttgtgagtaagccatggaacaccctcatctccgatccca 53774044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 51015042 - 51015144
Alignment:
Q  141 tgagagttaacttaaaatca-agatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcactgga 238  Q
    |||||||||||||||||||| |  |||||| ||||||||||| ||  ||  ||||||||||||||| |||||||||||   ||| |||||| ||||||||    
T  51015042 tgagagttaacttaaaatcagatttctgca-gaatcgtggcatgatggcaaggcaacgtggcacga-tggaggtttcagttttttaggcaaggcactgga 51015139  T
Q  239 aaaat 243  Q
    |||||    
T  51015140 aaaat 51015144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 15823286 - 15823391
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15823286 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactaga 15823385  T
Q  239 aaaatc 244  Q
    ||||||    
T  15823386 aaaatc 15823391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 10400371 - 10400268
Alignment:
Q  137 gttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcact 235  Q
    |||||||||||||||||||||||| | | |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10400371 gttgtgagagttaacttaaaatcaggtttctgc-ggaatcgtggcacgattgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcact 10400273  T
Q  236 ggaaa 240  Q
    |||||    
T  10400272 ggaaa 10400268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 28840418 - 28840522
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||  ||  |||||||||||||||||||||||||||  ||| |||||| | ||||||    
T  28840418 tgtgaaagttaacttaaaatcaggatctgcaggaatcgtggcacgatggcaaggcaacgtggcacgattggaggtttcagtttttaggcaaggtactgga 28840517  T
Q  239 aaaat 243  Q
    |||||    
T  28840518 aaaat 28840522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 28842232 - 28842338
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    |||||| |||||||||||||||| |||||| ||||||||||||||||  ||  ||| |||||||||||||||||||||||  ||| |||||| | |||||    
T  28842232 ttgtgaaagttaacttaaaatcaggatctgtaggaatcgtggcacgatggcaaggctacgtggcacgattggaggtttcagtttttaggcaaggtactgg 28842331  T
Q  238 aaaaatc 244  Q
    |||||||    
T  28842332 aaaaatc 28842338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 38925996 - 38925920
Alignment:
Q  141 tgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca 217  Q
    |||||||||||||||||||| | || |||| |||||||| ||||  |||||||||||||||||||||||||||||||    
T  38925996 tgagagttaacttaaaatcaggttccgcagaaatcgtggtacgatggctgggcaacgtggcacgattggaggtttca 38925920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 47451405 - 47451496
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaa 230  Q
    ||||||||||||||| ||||||   | ||||| |||||||||||||  ||||||||| |||||||||||||||||||||  |||||||||||    
T  47451405 tgtgagagttaacttcaaatcagattttgcagaaatcgtggcacgatggctgggcaatgtggcacgattggaggtttcagttttgaggcaaa 47451496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 49687301 - 49687400
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||||||||||||||| | | || || |||||||||| ||  ||||||||||||||||| |||||||||||||  ||||||||||  |||||||    
T  49687301 tgtgagagttaacttaaaatcaggttatgtagaaatcgtggcatgatggctgggcaacgtggcacaattggaggtttcagttttgaggcaagtcactgga 49687400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 3580160 - 3580054
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    ||||| ||||||||||||||||| | | ||||||||||||||||||| ||| |||||||||| ||| |||||| ||||||  | ||||||||  || |||    
T  3580160 ttgtgggagttaacttaaaatcaggttatgcaggaatcgtggcacgattgcagggcaacgtgacacaattggatgtttcagttatgaggcaagtcattgg 3580061  T
Q  238 aaaaatc 244  Q
    |||||||    
T  3580060 aaaaatc 3580054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 6822774 - 6822881
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca--agtttgaggcaaagcac 234  Q
    ||||||||||||||||||||||| | | |||||| |||||||||||||  ||||||||||||||||||| |||||||||||    |||||||||| ||||    
T  6822774 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggctgggcaacgtggcacga-tggaggtttcagttttttgaggcaaggcac 6822871  T
Q  235 tggaaaaatc 244  Q
    ||||||||||    
T  6822872 tggaaaaatc 6822881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 39462258 - 39462348
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaa 229  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||| |  | ||||||||||||||||||| |||||||||  ||||||||||    
T  39462258 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgacacaatggttgggcaacgtggcacgattagaggtttcagttttgaggcaa 39462348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 13761576 - 13761682
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcact 235  Q
    ||||||||||||||||||||||| | | |||||| |||||||||||||  |||||||||||||||| || |||||||||||   |||||||||| |||||    
T  13761576 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggctgggcaacgtggcatga-tggaggtttcagtttttgaggcaaggcact 13761673  T
Q  236 ggaaaaatc 244  Q
    |||||||||    
T  13761674 ggaaaaatc 13761682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 47179427 - 47179503
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    ||||||||||||||||||||||| | | |||||| |||||||||||||| ||||||||||||||||||| |||||||||    
T  47179427 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggctgggcaacgtggcacga-tggaggttt 47179503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 51752103 - 51752210
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca--agtttgaggcaaagcac 234  Q
    ||||||||||||||||||||||| | | |||||| |||||||||||||  | ||||||||||||||||| |||||||||||    |||||||||| ||||    
T  51752103 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggttgggcaacgtggcacga-tggaggtttcagttttttgaggcaaggcac 51752200  T
Q  235 tggaaaaatc 244  Q
    ||||||||||    
T  51752201 tggaaaaatc 51752210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 51749778 - 51749884
Alignment:
Q  139 tgtgagagttaacttaaaatcaag-atctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca--agtttgaggcaaagcact 235  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||  | |||||||||||| |||| |||||||||||    |||||||||| |||||    
T  51749778 tgtgagagttaacttaaaatcaagtttctgca-gaatcgtggcacgatggttgggcaacgtggtacga-tggaggtttcagttttttgaggcaaggcact 51749875  T
Q  236 ggaaaaatc 244  Q
    |||||||||    
T  51749876 ggaaaaatc 51749884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 47177077 - 47177182
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactg 236  Q
    ||||||||||||||||||||||| | | |||||| ||||||||||||||  |||||||||||||||||| ||||||||| |  |||  |||||  |||||    
T  47177077 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacgactgggcaacgtggcacga-tggaggttttagtttttgggcaagacactg 47177174  T
Q  237 gaaaaatc 244  Q
    ||||||||    
T  47177175 gaaaaatc 47177182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 13214854 - 13214920
Alignment:
Q  172 aatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||||||  | |||||||||||||||||||||||||||||  ||||||||||  |||||||    
T  13214854 aatcgtggcacgatggttgggcaacgtggcacgattggaggtttcagttttgaggcaagtcactgga 13214920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 13461392 - 13461347
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacga 184  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||    
T  13461392 tgtgagagttaacttaaaatcaggatctgcaggaatcgtgccacga 13461347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 14098511 - 14098443
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgat 206  Q
    |||||||||||||||||||||||   ||||||| |||||||||||||  |||| ||| |||||||||||    
T  14098511 ttgtgagagttaacttaaaatcagattctgcagaaatcgtggcacgatggctgagcaccgtggcacgat 14098443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 16225884 - 16225962
Alignment:
Q  136 tgttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    |||||| |||||||||||||||||| | | |||||| |||||||||||||| | ||||||||||||||||| |||||||||    
T  16225884 tgttgtaagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggttgggcaacgtggcacga-tggaggttt 16225962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 41646681 - 41646726
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacga 184  Q
    |||||||||||||||||||||| | ||||||| |||||||||||||    
T  41646681 tgtgagagttaacttaaaatcatgttctgcagaaatcgtggcacga 41646726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 16231373 - 16231416
Alignment:
Q  171 gaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||    
T  16231373 gaatcgtggcacgacggctgggcaacgtggcacga-tggaggttt 16231416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 20291280 - 20291386
Alignment:
Q  139 tgtgagagttaacttaaaatca-agatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca--agtttgaggcaaagcact 235  Q
    |||||||||||||||||||||| |  |||||| ||||||||||||||  ||  ||||||||||||||  |||||||||||    |||||||||  |||||    
T  20291280 tgtgagagttaacttaaaatcagatttctgca-gaatcgtggcacgatggcaaggcaacgtggcacg-gtggaggtttcagttttttgaggcatggcact 20291377  T
Q  236 ggaaaaatc 244  Q
    |||||||||    
T  20291378 ggaaaaatc 20291386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 28207550 - 28207517
Alignment:
Q  196 cgtggcacgattggaggtttcaagtttgaggcaa 229  Q
    ||||||||||||||||||||||| ||||||||||    
T  28207550 cgtggcacgattggaggtttcaactttgaggcaa 28207517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 6823655 - 6823729
Alignment:
Q  171 gaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagttt--gaggcaaagcactggaaaaatc 244  Q
    ||||| ||||||||  | |||||||||||||||||| ||||||||||  |||  ||||||| ||||||||||||||    
T  6823655 gaatcatggcacgatggttgggcaacgtggcacgat-ggaggtttcagttttttgaggcaaggcactggaaaaatc 6823729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 28207581 - 28207541
Alignment:
Q  144 gagttaacttaaaatcaagatctgcaggaatcgtggcacga 184  Q
    ||||||||||||||||| | ||||||| |||||||||||||    
T  28207581 gagttaacttaaaatcaggttctgcagaaatcgtggcacga 28207541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 30790936 - 30790832
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    ||||||||| |||||||||| || | |||| || ||||||| ||||  ||| | |||| |||||||||||||| ||||||  | ||| ||||  ||||||    
T  30790936 ttgtgagagctaacttaaaaccaggttctggagaaatcgtgacacgtttgcagagcaatgtggcacgattggatgtttcagttatgaagcaagtcactgg 30790837  T
Q  238 aaaaa 242  Q
    |||||    
T  30790836 aaaaa 30790832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 28252122 - 28252021
Alignment:
Q  143 agagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactggaaaaa 242  Q
    |||||||||||||||||| |||||||||||||||||||||||  ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28252122 agagttaacttaaaatcaggatctgcaggaatcgtggcacgatggctaggcaacgtggtacgattggaggtttcaagtttgaggcaaagcactggaaaaa 28252023  T
Q  243 tc 244  Q
    ||    
T  28252022 tc 28252021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 4423835 - 4423940
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||  ||| |||||| ||||||||    
T  4423835 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacaattgctgggcaacgtggcacaattggaggtttcagttttaaggcaaggcactgga 4423934  T
Q  239 aaaatc 244  Q
    ||||||    
T  4423935 aaaatc 4423940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 27826781 - 27826887
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcactg 236  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||   ||||| |||||||||||    
T  27826781 ttgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgattgctgggcaacgtggcacga-tggaggtttcattttttgaagcaaagcactg 27826879  T
Q  237 gaaaaatc 244  Q
    ||||||||    
T  27826880 gaaaaatc 27826887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 27829092 - 27829198
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcactg 236  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||   ||||||||||| |||||    
T  27829092 ttgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgattgctgggcaacgtggcacga-tggaggtttcattttttgaggcaaaacactg 27829190  T
Q  237 gaaaaatc 244  Q
    ||||||||    
T  27829191 gaaaaatc 27829198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 12517565 - 12517460
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||||||||||||||| |||||||||||||||||||||||  ||  |||||||||||||||||||||||||||  |||||||||| | ||||||    
T  12517565 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgatggcaaggcaacgtggcacgattggaggtttcagttttgaggcaatgtactgga 12517466  T
Q  239 aaaatc 244  Q
    ||||||    
T  12517465 aaaatc 12517460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 14807552 - 14807653
Alignment:
Q  143 agagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactggaaaa 241  Q
    |||||||||||||||||| | | |||||| |||||||||| ||  | ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14807552 agagttaacttaaaatcaggtttctgcag-aatcgtggcatgatggttgggcaacgtgacacgattggaggtttcaagtttgaggcaaagcactggaaaa 14807650  T
Q  242 atc 244  Q
    |||    
T  14807651 atc 14807653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 15072505 - 15072611
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    |||||||||||||||||||||||   ||||||||||||||| |||||  ||||||||||||| |||||||||||||||||  ||||| ||||  |||| |    
T  15072505 ttgtgagagttaacttaaaatcagattctgcaggaatcgtgacacgatggctgggcaacgtgacacgattggaggtttcagttttgaagcaagccactag 15072604  T
Q  238 aaaaatc 244  Q
    |||||||    
T  15072605 aaaaatc 15072611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 15067776 - 15067882
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    ||||||| |||||||||||||||   | |||||||||||||||| ||  |||||||||| ||||||||||||||||||||  ||||| ||||  ||||||    
T  15067776 ttgtgagtgttaacttaaaatcagattttgcaggaatcgtggcaagatggctgggcaacatggcacgattggaggtttcagttttgaagcaagccactgg 15067875  T
Q  238 aaaaatc 244  Q
    |||||||    
T  15067876 aaaaatc 15067882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 44720616 - 44720723
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat--ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcact 235  Q
    ||||||||||||||||||||||| | |  |||||| |||||||||| || |||||||||  |||||||| ||||||||||||  |||||||||| | |||    
T  44720616 ttgtgagagttaacttaaaatcaggttttctgcag-aatcgtggcatgattgctgggcattgtggcacgtttggaggtttcagttttgaggcaaggtact 44720714  T
Q  236 ggaaaaatc 244  Q
    |||||||||    
T  44720715 ggaaaaatc 44720723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 18810483 - 18810587
Alignment:
Q  139 tgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcactg 236  Q
    |||||||||||||||||||||| | | |||||| |||||||||||||| ||||||||||||||||||| ||||||||| |   ||| |||||| ||||||    
T  18810483 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggctgggcaacgtggcacga-tggaggttttatttttttaggcaaggcactg 18810580  T
Q  237 gaaaaat 243  Q
    |||||||    
T  18810581 gaaaaat 18810587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 18812667 - 18812773
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcact 235  Q
    ||||||||||||||||||||||| | | ||| || |||||||||||||| ||||||||||||||||||| ||||||||| |   ||| |||||| |||||    
T  18812667 ttgtgagagttaacttaaaatcaggtttctgaag-aatcgtggcacgacggctgggcaacgtggcacga-tggaggttttagttttttaggcaaggcact 18812764  T
Q  236 ggaaaaatc 244  Q
    |||||||||    
T  18812765 ggaaaaatc 18812773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 43079346 - 43079422
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    ||||||||||||||||||||||| | | |||||| |||||||||||||| ||  ||||||||||||||| |||||||||    
T  43079346 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggcaaggcaacgtggcacga-tggaggttt 43079422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 43081721 - 43081797
Alignment:
Q  138 ttgtgagagttaacttaaaatcaag-atctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    ||||||||||||||||||||||| |  |||||| ||||||||||||||| ||  ||||| ||||||||| |||||||||    
T  43081721 ttgtgagagttaacttaaaatcaggtttctgca-gaatcgtggcacgacggcaaggcaaagtggcacga-tggaggttt 43081797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 15530661 - 15530559
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||||||||||||||| |||||||||||||||||||||||  |||||| |||||||||| ||||||||||||||||||||||||||||||| ||    
T  15530661 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgatggctgggtaacgtggcacaattggaggtttcaagtttgaggcaaagcactcga 15530562  T
Q  239 aaa 241  Q
    |||    
T  15530561 aaa 15530559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 8995255 - 8995360
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||  |||||||||||||||||||||||||||||||  |||  ||||| ||||||||    
T  8995255 tgtgagagttaacttaaaatcaggatctgtaggaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagtttttgggcaaggcactgga 8995354  T
Q  239 aaaatc 244  Q
    ||||||    
T  8995355 aaaatc 8995360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 9019702 - 9019807
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||  |||||||||||||||||||||||||||||||  |||  ||||| ||||||||    
T  9019702 tgtgagagttaacttaaaatcaggatctgtaggaatcgtggcacgatggctgggcaacgtggcacgattggaggtttcagtttttgggcaaggcactgga 9019801  T
Q  239 aaaatc 244  Q
    ||||||    
T  9019802 aaaatc 9019807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 19227949 - 19227843
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaa-gtttgaggcaaagcactg 236  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||  | |||||||||||||| || ||||||||||||  |||||||||| ||||||    
T  19227949 ttgtgagagttaacttaaaattaagatctgcaggaatcgtggcacgatggttgggcaacgtggcatga-tggaggtttcaatttttgaggcaaggcactg 19227851  T
Q  237 gaaaaatc 244  Q
    ||||||||    
T  19227850 gaaaaatc 19227843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 1072395 - 1072305
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaa 229  Q
    |||||||||||||||||||||| | ||||||| |||||||| ||||  | ||||||||||||||||||||||||||| |  ||||||||||    
T  1072395 tgtgagagttaacttaaaatcaggttctgcagaaatcgtggtacgatggttgggcaacgtggcacgattggaggtttaagttttgaggcaa 1072305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 32279794 - 32279871
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca 217  Q
    |||||||||||||||||||||| | |||||||||| |||| ||||| || |||||||||||||||||||||| ||||||    
T  32279794 tgtgagagttaacttaaaatca-gttctgcaggaaacgtgacacgattgttgggcaacgtggcacgattggatgtttca 32279871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 14507716 - 14507639
Alignment:
Q  139 tgtgagagttaacttaaaatca-agatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca 217  Q
    |||||||||||||||||||||| |  ||||||| |||||||||||||  ||||||||||||||||||| |||||||||||    
T  14507716 tgtgagagttaacttaaaatcagatttctgcag-aatcgtggcacgatggctgggcaacgtggcacga-tggaggtttca 14507639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 33308684 - 33308760
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    ||||||||||||||||||||||| | | |||||| |||||||||||||| |||||||  |||||||||| |||||||||    
T  33308684 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggctgggcttcgtggcacga-tggaggttt 33308760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 33310953 - 33311029
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    ||||||||||||||||||||||| | | |||||| |||||||||||||| |||||||  |||||||||| |||||||||    
T  33310953 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgacggctgggcttcgtggcacga-tggaggttt 33311029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 4816749 - 4816701
Alignment:
Q  196 cgtggcacgattggaggtttcaagtttgaggcaaagcactggaaaaatc 244  Q
    ||||||||||||||||||||||  |||||||||| | ||||||||||||    
T  4816749 cgtggcacgattggaggtttcagttttgaggcaaggtactggaaaaatc 4816701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 15533221 - 15533175
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacga 184  Q
    ||||||||||||||||||||||| ||||| ||| ||||||| |||||    
T  15533221 ttgtgagagttaacttaaaatcaggatctacagaaatcgtgccacga 15533175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 15541679 - 15541634
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacga 184  Q
    |||||||||||||||||||||| ||| ||||| ||||||| |||||    
T  15541679 tgtgagagttaacttaaaatcaggatttgcagaaatcgtgccacga 15541634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 26068882 - 26068807
Alignment:
Q  139 tgtgagagttaacttaaaatcaag-atctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggttt 215  Q
    |||||||||||||||||||||| |  |||||| ||||||||||||||| ||  |||||||||||| || |||||||||    
T  26068882 tgtgagagttaacttaaaatcaggtttctgca-gaatcgtggcacgacggcaaggcaacgtggcatga-tggaggttt 26068807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 2628 - 2734
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |||||||||||||||||||||||||||  |||||||||| | |||||    
T  2628 ttgtgagagttaacttaaaatcaagatctgcaggaattgtgacacgattgctaggcaacgtggcacgattggaggtttcagttttgaggcaaggtactgg 2727  T
Q  238 aaaaatc 244  Q
    |||||||    
T  2728 aaaaatc 2734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 16775897 - 16776002
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||  ||  ||||||||| |||||||||||||||||||||||||||||||||||| |    
T  16775897 tgtgagaattaacttaaaatcaggatctgcaggaatcgtggcacgatggcaaggcaacgtgacacgattggaggtttcaagtttgaggcaaagcactgaa 16775996  T
Q  239 aaaatc 244  Q
    ||||||    
T  16775997 aaaatc 16776002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 38881845 - 38881950
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcactgg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |   |||||||||| |||||||    
T  38881845 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgattgctgggcaacgtggcacga-tggaggttttagtttttgaggcaaggcactgg 38881943  T
Q  238 aaaaatc 244  Q
    |||||||    
T  38881944 aaaaatc 38881950  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 659712 - 659817
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    ||||||||||||||||||||||| | ||||||| |||||||||||||  ||| |||||||||||||||||||||||||| ||||||||||||  ||||||    
T  659712 ttgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatggctaggcaacgtggcacgattggaggtttc-agtttgaggcaagtcactgg 659810  T
Q  238 aaaaatc 244  Q
    |||||||    
T  659811 aaaaatc 659817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 20504453 - 20504362
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaa 229  Q
    ||||||||||||||||||||||| | ||||||| |||||||||||||  ||||||||||||||||||||||||||||| |  ||||||||||    
T  20504453 ttgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatagctgggcaacgtggcacgattggaggttttagttttgaggcaa 20504362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 21947769 - 21947857
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgagg 226  Q
    ||||||||||||||||||||||| | ||||||| |||||||||||||  ||| ||||||||| |||||||||||||||||  |||||||    
T  21947769 ttgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatggctaggcaacgtgacacgattggaggtttcagttttgagg 21947857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 18186587 - 18186497
Alignment:
Q  139 tgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaa 229  Q
    |||||||||||||||||||||||| | |||||| |||||||| ||||  |||||||||||||||||||||||||||||||  ||||||||||    
T  18186587 tgtgagagttaacttaaaatcaagtttctgcag-aatcgtggtacgatggctgggcaacgtggcacgattggaggtttcagttttgaggcaa 18186497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 4236374 - 4236475
Alignment:
Q  143 agagttaacttaaaatca-agatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactggaaaa 241  Q
    |||||||||||||||||| |  ||||||| ||| |||||||||  |||||||||||||||||||||||||||||||  ||| |||||| |||||||||||    
T  4236374 agagttaacttaaaatcagatttctgcag-aattgtggcacgatggctgggcaacgtggcacgattggaggtttcagttttaaggcaaggcactggaaaa 4236472  T
Q  242 atc 244  Q
    |||    
T  4236473 atc 4236475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 20508001 - 20507911
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaa 229  Q
    |||||||||||||||||||||| | ||||||| |||||||||||||  | |||||||||| |||||||||||||||| |  ||||||||||    
T  20508001 tgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatagttgggcaacgtagcacgattggaggttttagttttgaggcaa 20507911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 31466497 - 31466391
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    ||||||||||||||||||||||| | | ||||||||||||||||||| ||  |||||||||||||||||  || ||||||  | ||||||||  ||||||    
T  31466497 ttgtgagagttaacttaaaatcaggttttgcaggaatcgtggcacgattgaagggcaacgtggcacgatgagatgtttcagttatgaggcaagtcactgg 31466398  T
Q  238 aaaaatc 244  Q
    |||||||    
T  31466397 aaaaatc 31466391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 12556442 - 12556342
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    ||||||||||||| ||||||||| | ||||||| ||||||||||  |  ||||||||||||||||| |||||||||||||  ||||||||||  ||||||    
T  12556442 ttgtgagagttaatttaaaatcaggttctgcagaaatcgtggcataatggctgggcaacgtggcacaattggaggtttcagttttgaggcaagtcactgg 12556343  T
Q  238 a 238  Q
    |    
T  12556342 a 12556342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 2818847 - 2818747
Alignment:
Q  139 tgtgagagttaa-cttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgg 237  Q
    |||||||||||| |||||||| | | ||||||| |||||||||||||  ||| |||||| ||||||||||||||||||||  ||||||||||  ||||||    
T  2818847 tgtgagagttaaacttaaaattaggttctgcagaaatcgtggcacgatggctaggcaacatggcacgattggaggtttcagttttgaggcaagtcactgg 2818748  T
Q  238 a 238  Q
    |    
T  2818747 a 2818747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 34477633 - 34477527
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcact 235  Q
    ||||||||||||||||||||||||| | |||||| |||||||||||||  ||||||||||||||||||| ||||||||| |   ||| |||||| |||||    
T  34477633 ttgtgagagttaacttaaaatcaagtttctgcag-aatcgtggcacgatggctgggcaacgtggcacga-tggaggttttagttttttaggcaaggcact 34477536  T
Q  236 ggaaaaatc 244  Q
    |||||||||    
T  34477535 ggaaaaatc 34477527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 34479973 - 34479867
Alignment:
Q  138 ttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcact 235  Q
    ||||||||||||||||||||||| | | |||||| |||||||||||||  ||||||||||||||||||| ||||||||| |   ||| |||||| |||||    
T  34479973 ttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggctgggcaacgtggcacga-tggaggttttagttttttaggcaaggcact 34479876  T
Q  236 ggaaaaatc 244  Q
    |||||||||    
T  34479875 ggaaaaatc 34479867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 25921992 - 25921886
Alignment:
Q  139 tgtgagagttaacttaaaatcaag-atctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca--agtttgaggcaaagcact 235  Q
    |||||||||||||||||||||| |  |||||| ||||||||||||||  | ||| ||||||||||||| |||||||||||    |||||||||| |||||    
T  25921992 tgtgagagttaacttaaaatcaggtttctgca-gaatcgtggcacgatggttggacaacgtggcacga-tggaggtttcagttttttgaggcaaggcact 25921895  T
Q  236 ggaaaaatc 244  Q
    |||||||||    
T  25921894 ggaaaaatc 25921886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 21684972 - 21684905
Alignment:
Q  136 tgttgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcac 203  Q
    ||||||||||||||||||||||||| | | |||||| |||||||||||||  |||||||||||||||||    
T  21684972 tgttgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggctgggcaacgtggcac 21684905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 2174680 - 2174785
Alignment:
Q  139 tgtgagagttaacttaaaatcaag-atctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcactg 236  Q
    |||||||||||||||||||||| |  |||||| ||||||||||||||  ||  ||||||||||||||| |||||||||||   ||| |||||| ||||||    
T  2174680 tgtgagagttaacttaaaatcaggtttctgca-gaatcgtggcacgatggcaaggcaacgtggcacga-tggaggtttcagttttttaggcaaggcactg 2174777  T
Q  237 gaaaaatc 244  Q
    ||||||||    
T  2174778 gaaaaatc 2174785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 39797849 - 39797954
Alignment:
Q  139 tgtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttca-agtttgaggcaaagcactg 236  Q
    |||||||||||||||||||||| | | |||||  |||||||||||||  |||||||||||||||| || |||||||||||   |||||||||| |||| |    
T  39797849 tgtgagagttaacttaaaatcaggtttctgcat-aatcgtggcacgatggctgggcaacgtggcatga-tggaggtttcagtttttgaggcaaggcaccg 39797946  T
Q  237 gaaaaatc 244  Q
    ||||||||    
T  39797947 gaaaaatc 39797954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 659929 - 659880
Alignment:
Q  194 aacgtggcacgattggaggtttcaagtttgaggcaaagcactggaaaaatc 244  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||||||||    
T  659929 aacgtggcacgattggaggtttc-agtttgaggcaagtcactggaaaaatc 659880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 6756257 - 6756354
Alignment:
Q  141 tgagagttaacttaaaatcaagatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    |||| ||||| ||||||||| | ||| ||| |||||||||||||   ||||  ||| |||||||||| |||||||||| ||||||||||  |||||||    
T  6756257 tgagggttaatttaaaatcaggttctacagaaatcgtggcacgatgcctggataacatggcacgattagaggtttcaactttgaggcaagtcactgga 6756354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 661286 - 661246
Alignment:
Q  139 tgtgagagttaacttaaaatcaagatctgcaggaatcgtgg 179  Q
    |||||||||||||||||||||| | ||||||| ||||||||    
T  661286 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgg 661246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 69834 - 69728
Alignment:
Q  138 ttgtgagagttaacttaaaatca-agatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactg 236  Q
    |||| |||||||||||||||||| |  ||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  69834 ttgtaagagttaacttaaaatcagatttctgcag-aatcgtggcacgatggctaggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactg 69736  T
Q  237 gaaaaatc 244  Q
    ||||||||    
T  69735 gaaaaatc 69728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 73545 - 73440
Alignment:
Q  138 ttgtgagagttaacttaaaatca-agatctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactg 236  Q
    |||| |||||||||||||||||| |  | ||||| |||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  73545 ttgtaagagttaacttaaaatcagatttatgcag-aatcgtggcacgatggctaggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactg 73447  T
Q  237 gaaaaat 243  Q
    |||||||    
T  73446 gaaaaat 73440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 14768 - 14869
Alignment:
Q  140 gtgagagttaacttaaaatcaagat-ctgcaggaatcgtggcacgactgctgggcaacgtggcacgattggaggtttcaagtttgaggcaaagcactgga 238  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||| ||  ||||||||||| ||||| ||| ||||||  | ||||||||  |||||||    
T  14768 gtgagagttaacttaaaatcaggattctgcaggaatcgtggcacgattgaagggcaacgtggaacgatgggaagtttcagttatgaggcaagtcactgga 14867  T
Q  239 aa 240  Q
    ||    
T  14868 aa 14869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 28938 - 29005
Alignment:
Q  136 tgttgtgagagttaacttaaaatcaag-atctgcaggaatcgtggcacgactgctgggcaacgtggcac 203  Q
    ||||||||||||||||||||||||| |  |||||| ||||||||||||||  |||||||||||||||||    
T  28938 tgttgtgagagttaacttaaaatcaggtttctgca-gaatcgtggcacgatggctgggcaacgtggcac 29005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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