View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7879_low_2 (Length: 317)

Name: NF7879_low_2
Description: NF7879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7879_low_2
NF7879_low_2
[»] chr3 (3 HSPs)
chr3 (132-273)||(28538122-28538263)
chr3 (249-287)||(4638172-4638210)
chr3 (229-281)||(7648764-7648816)
[»] chr5 (4 HSPs)
chr5 (216-281)||(7616945-7617010)
chr5 (232-298)||(35638066-35638132)
chr5 (231-306)||(39728387-39728462)
chr5 (198-306)||(21149734-21149842)
[»] scaffold0045 (1 HSPs)
scaffold0045 (230-306)||(58064-58140)
[»] chr6 (3 HSPs)
chr6 (234-283)||(11142629-11142678)
chr6 (232-283)||(8888908-8888959)
chr6 (218-287)||(14107377-14107446)
[»] chr4 (1 HSPs)
chr4 (194-281)||(37369037-37369124)
[»] chr1 (1 HSPs)
chr1 (244-287)||(10507717-10507760)
[»] chr8 (3 HSPs)
chr8 (229-282)||(18091427-18091480)
chr8 (229-281)||(583840-583892)
chr8 (229-273)||(33401829-33401873)
[»] chr2 (2 HSPs)
chr2 (198-287)||(26805314-26805403)
chr2 (229-297)||(41187717-41187785)
[»] scaffold0209 (1 HSPs)
scaffold0209 (229-281)||(12600-12652)


Alignment Details
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 273
Target Start/End: Original strand, 28538122 - 28538263
Alignment:
Q  132 tggggggttaacggtgacggagtttatttttgtgccgttagtttatagnnnnnnnnnnnnngttgacttttgcatcggttttcaatccactaataacggg 231  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||              ||  |||||||| |||||||||||||||||||||||||    
T  28538122 tggggggttaacggtgacggagtttttttttgtgccgttagtttatagtttttttttttttcttttcttttgcaccggttttcaatccactaataacggg 28538221  T
Q  232 cgactaatttgactcaagcgtagaggtatgcacactggtcaa 273  Q
    ||||||||| |||||| ||||||||  ||||||||| |||||    
T  28538222 cgactaattcgactcatgcgtagagacatgcacactagtcaa 28538263  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 287
Target Start/End: Complemental strand, 4638210 - 4638172
Alignment:
Q  249 gcgtagaggtatgcacactggtcaaacgttgtttctcct 287  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  4638210 gcgtagaggtatgcgcactggtcaagcgttgtttctcct 4638172  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 7648816 - 7648764
Alignment:
Q  229 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 281  Q
    |||||||||||  | |||  |||||||||||||| ||||||||||||||||||    
T  7648816 gggcgactaatccggctcgtgcgtagaggtatgcgcactggtcaaacgttgtt 7648764  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 7617010 - 7616945
Alignment:
Q  216 atccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 281  Q
    |||||| ||||| || |||||||| ||||||| ||||||||| ||||| |||||||||||||||||    
T  7617010 atccaccaataatggacgactaatctgactcatgcgtagaggcatgcatactggtcaaacgttgtt 7616945  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 298
Target Start/End: Original strand, 35638066 - 35638132
Alignment:
Q  232 cgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaat 298  Q
    |||||||| ||||||  ||||||||||||||||||||  ||||||||||| ||||| | ||||||||    
T  35638066 cgactaatctgactcgtgcgtagaggtatgcacactgaccaaacgttgttcctcctgaaaatcgaat 35638132  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 39728462 - 39728387
Alignment:
Q  231 gcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaatctagtatt 306  Q
    |||||||||| ||||| |||||||||| ||||||||||| |||  ||||||||  || ||||||||| || |||||    
T  39728462 gcgactaattcgactcgagcgtagaggcatgcacactggccaagtgttgtttcctctgataatcgaacctggtatt 39728387  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 306
Target Start/End: Complemental strand, 21149842 - 21149734
Alignment:
Q  198 cttttgcatcggttttcaatccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaa 297  Q
    |||| |||||||||||| |||||| |||   |||||||||||   ||||  ||||||||  |||| |||||||||||||||||| | ||| | |||||||    
T  21149842 ctttcgcatcggttttctatccaccaatggtgggcgactaatccaactcgtgcgtagagtcatgcgcactggtcaaacgttgttccccctgaaaatcgaa 21149743  T
Q  298 tctagtatt 306  Q
     || |||||    
T  21149742 cctggtatt 21149734  T

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Target: scaffold0045 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 58064 - 58140
Alignment:
Q  230 ggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaatctagtatt 306  Q
    ||||||||||   ||||| |||||||||||| ||||||||||||||||||||||| ||   |||| |||||||||||    
T  58064 ggcgactaatccaactcatgcgtagaggtatacacactggtcaaacgttgtttcttctaggaatcaaatctagtatt 58140  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 11142678 - 11142629
Alignment:
Q  234 actaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttc 283  Q
    |||||| ||||||| ||||||||| |||| ||||||||||||||||||||    
T  11142678 actaatctgactcatgcgtagaggcatgcgcactggtcaaacgttgtttc 11142629  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 8888959 - 8888908
Alignment:
Q  232 cgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttc 283  Q
    ||||||||  |||||| |||||||||||||| |||||| |||||||||||||    
T  8888959 cgactaatccgactcatgcgtagaggtatgcgcactggccaaacgttgtttc 8888908  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 14107377 - 14107446
Alignment:
Q  218 ccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctcct 287  Q
    |||||||||| |||||||||||  | |||| ||||||||| |||  |||||||||| ||||||| |||||    
T  14107377 ccactaataatgggcgactaatccggctcatgcgtagaggcatgtgcactggtcaagcgttgttcctcct 14107446  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 281
Target Start/End: Original strand, 37369037 - 37369124
Alignment:
Q  194 ttgacttttgcatcggttttcaatccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 281  Q
    |||||||| |||||||||| | || ||| ||||  |||||||| ||  |||||  ||||||||| ||||||||||| |||||||||||    
T  37369037 ttgactttcgcatcggtttccgattcaccaatagtgggcgacttatccgactcgtgcgtagaggcatgcacactggacaaacgttgtt 37369124  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 10507760 - 10507717
Alignment:
Q  244 ctcaagcgtagaggtatgcacactggtcaaacgttgtttctcct 287  Q
    |||| ||||||||||||||||||||| ||||||||||| |||||    
T  10507760 ctcatgcgtagaggtatgcacactggccaaacgttgttcctcct 10507717  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 18091480 - 18091427
Alignment:
Q  229 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgttt 282  Q
    |||||||||||| | |||  ||||||||| |||| |||||||||||||||||||    
T  18091480 gggcgactaattcgcctcgtgcgtagaggcatgcgcactggtcaaacgttgttt 18091427  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 583892 - 583840
Alignment:
Q  229 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 281  Q
    |||||||||||  |||||| ||||||||| |||| |||||||||| |||||||    
T  583892 gggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 583840  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 33401829 - 33401873
Alignment:
Q  229 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaa 273  Q
    |||||||||||  |||||| ||||||||| |||||||||||||||    
T  33401829 gggcgactaatccgactcatgcgtagaggcatgcacactggtcaa 33401873  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 26805403 - 26805314
Alignment:
Q  198 cttttgcatcggttttcaatccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctcct 287  Q
    ||||||||||||||||| | |||| ||    |||||||||||  |||||| ||||||||| |||  |||||| ||||||| |||||||||    
T  26805403 cttttgcatcggttttcgagccaccaaaggtgggcgactaatccgactcatgcgtagaggcatgtgcactggccaaacgtcgtttctcct 26805314  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 41187785 - 41187717
Alignment:
Q  229 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaa 297  Q
    ||||||||||| || |||| ||||||||| ||| |||||||||||  |||||| | ||| |||||||||    
T  41187785 gggcgactaatatgtctcatgcgtagaggcatggacactggtcaagtgttgttccccctcataatcgaa 41187717  T

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Target: scaffold0209 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 12652 - 12600
Alignment:
Q  229 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 281  Q
    |||||||||||  |||||| ||||||||| |||| |||||||||| |||||||    
T  12652 gggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 12600  T

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