View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7880_high_1 (Length: 850)
Name: NF7880_high_1
Description: NF7880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7880_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 719; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 719; E-Value: 0
Query Start/End: Original strand, 1 - 833
Target Start/End: Complemental strand, 34424056 - 34423225
Alignment:
| Q |
1 |
ctcgatcaggtagactgtttttcaaatgttgaagttcttcaacaatagccatgnnnnnnntatcaatttccttaagtcagtctaacatcataacaagtgc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34424056 |
ctcgatcaggtagactgtttttcaaatgttgaagttcttcaacaatagccatgaaaaaaatatcaatttccttaagtcagtctaacatcataacaagtgc |
34423957 |
T |
|
| Q |
101 |
ttannnnnnnncaccagaaaagatagaacagtagatatgccaatatgtcatatatgaggaaagaaatgctaaatgatcctagacttaagatcccctttct |
200 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34423956 |
ttattttttt-caccagaaaagatagaacagtagatatgccaatatgtcatatatgaggaaagaaatgctaaatgatcctagacttaagatcccctttct |
34423858 |
T |
|
| Q |
201 |
ttcaccnnnnnnngtcctagacttggtacttttgtactaaatgagacaagtaaacactaaacaaatcaaacctcagccagcacctagggtgttgattgat |
300 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34423857 |
ttcaccaaaaaaagtcctagacttagtacttttgtactaaatgagacaagtaaacattaaacaaatcaaacctcagccagcacctagggtgttgattgat |
34423758 |
T |
|
| Q |
301 |
aaaagattctaggtgctt-aatcaaattgcagggtaccatgtttacactttaacaaataaactgctactactatacattagccacagaaggttctcatcg |
399 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34423757 |
aaaagattctaggtgctttaatcaaattgcagggtaccatgtttacactttaacaaataaactgctactactatacattagccacagaaggttctcatca |
34423658 |
T |
|
| Q |
400 |
tacaacagaatagacctgcaatgggttcaaccttccctagactctgccatataagctttgtagcactatttattaagcaattcatcattaacagtcgttg |
499 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34423657 |
tacaacagaatagacctgcaatgggttcaaccttccctagactctgccatataagctttgtagcactattcattaagcaattcatcattaacagtcgttg |
34423558 |
T |
|
| Q |
500 |
atatcatcattcaaaagcaaagcaacgttctgagagctcatttgaatgcatgaatagtttttaatgcagaaatgagaactacaggttataggttcccatg |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34423557 |
atatcatcattcaaaagcaaagcaacgttctgagagctcatttgaatgcatgaatagtttttaatgcagaaatgagaactacaggttataggttcccatg |
34423458 |
T |
|
| Q |
600 |
tagctccaaaatttacatcacttaaaattacatttcatattgtaggagggtgaggacgcaaatgatgaaaaggatcacatcagctttaaaataaagtatt |
699 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
34423457 |
tagctccaaaatttacaccacttaaaattacatttcatattgtagga-ggtgaggacgcaaatgatgaaaaggatcacatcagctataaaataaagtatt |
34423359 |
T |
|
| Q |
700 |
acaagagatctttttaacaaattaaaagtccgatcattttgctaaaataaactatgaaaactaagaatctacaagaccatgatattcatatcccaaaatc |
799 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34423358 |
acaagagatctttttaacaaattaaaagtccgatcattttgctaaaataaactatgaaaactaagaatctacaagaccgtgatattcatatcccaaaatc |
34423259 |
T |
|
| Q |
800 |
agagtctaaaagactactccctctagccttaatt |
833 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
34423258 |
agagtctaaaagactactccctctagccttaatt |
34423225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 34419853 - 34419804
Alignment:
| Q |
4 |
gatcaggtagactgtttttcaaatgttgaagttcttcaacaatagccatg |
53 |
Q |
| |
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||||||||||||||||| ||||||||||||| |||||| ||||| ||||| |
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|
| T |
34419853 |
gatcaggtagactgtttctcaaatgttgaagctcttcagcaataaccatg |
34419804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 24346833 - 24346784
Alignment:
| Q |
4 |
gatcaggtagactgtttttcaaatgttgaagttcttcaacaatagccatg |
53 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||| || ||||| ||||| |
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| T |
24346833 |
gatcgggtagactgtttctcaaatgttgaagttctgcagcaataaccatg |
24346784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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