View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7880_high_9 (Length: 283)

Name: NF7880_high_9
Description: NF7880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7880_high_9
NF7880_high_9
[»] chr8 (3 HSPs)
chr8 (9-264)||(5198446-5198694)
chr8 (48-264)||(5177972-5178184)
chr8 (9-78)||(5207394-5207463)
[»] chr5 (1 HSPs)
chr5 (33-79)||(14191104-14191150)
[»] chr2 (4 HSPs)
chr2 (33-79)||(35611522-35611568)
chr2 (33-78)||(27194351-27194395)
chr2 (33-78)||(27844165-27844209)
chr2 (33-78)||(39441378-39441423)
[»] scaffold0356 (1 HSPs)
scaffold0356 (33-78)||(15343-15388)
[»] chr6 (2 HSPs)
chr6 (33-78)||(16015331-16015376)
chr6 (33-78)||(18344638-18344682)
[»] chr4 (1 HSPs)
chr4 (33-78)||(617886-617930)
[»] chr1 (2 HSPs)
chr1 (33-78)||(2331046-2331091)
chr1 (33-78)||(48233891-48233935)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 5198694 - 5198446
Alignment:
Q  9 agtatcatagagttagtactctaaatttgttctaattaccatcaatgacaattacaacatgttctggcctagctgcaatgcacacatcatgttctgcaat 108  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198694 agtatgatacagttagtactctaaatttgttctaattaccatcaatgacaattacaacatgttctggcctagctgcaatgcacacatcatgttctgcaat 5198595  T
Q  109 ctttattgattaatttcaaattaggaagttagccgttgagttacttggaannnnnnnnatgaatataataactcaatcaatatgtgtattttatttttct 208  Q
    |||||||||||||||||||||||||||||||||||||||       ||||        ||||||||||||||||||||||||||||||||||||||||||    
T  5198594 ctttattgattaatttcaaattaggaagttagccgttga-------ggaattttttttatgaatataataactcaatcaatatgtgtattttatttttct 5198502  T
Q  209 cgtgaaatatttgcaaataggaacaagtatgcgagggttatctattttcatatgaa 264  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5198501 cgtgaaatatttacaaataggaacaagtatgcgagggttatctattttcatatgaa 5198446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 48 - 264
Target Start/End: Original strand, 5177972 - 5178184
Alignment:
Q  48 catcaatgacaattacaacatgttctggcctagctgcaatgcacacatcatgttctgcaatctttattgattaatttcaaattaggaagttagccgttga 147  Q
    ||||||||| |||||||||||||||  |||||| ||||||| ||||||||||||||||||||||| |||||||||||| |||||||| |||||||| |||    
T  5177972 catcaatgaaaattacaacatgttc--gcctagttgcaatgtacacatcatgttctgcaatctttcttgattaatttcgaattaggaggttagccgatga 5178069  T
Q  148 gttacttggaannnnnnnnatgaatataataactcaatcaatatgtgtattttatttttctcgtgaaatatttgcaaataggaacaagtatgcgagggtt 247  Q
    ||||||| |||        |||||||||| | ||||||||  |||||||||||||||||||||||||| |||| ||||| |||||||||||| ||||| |    
T  5178070 gttactttgaaattttttgatgaatataacagctcaatca--atgtgtattttatttttctcgtgaaacatttacaaattggaacaagtatgtgagggct 5178167  T
Q  248 atctattttcatatgaa 264  Q
    |||||||||||||||||    
T  5178168 atctattttcatatgaa 5178184  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 5207394 - 5207463
Alignment:
Q  9 agtatcatagagttagtactctaaatttgttctaattaccatcaatgacaattacaacatgttctggcct 78  Q
    |||||||||||||| |||| || | |||| |||| || ||||| |||||||||||| |||||||||||||    
T  5207394 agtatcatagagttcgtaccctcattttgctctatttcccatcgatgacaattacagcatgttctggcct 5207463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 14191150 - 14191104
Alignment:
Q  33 atttgttctaattaccatcaatgacaattacaacatgttctggccta 79  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||    
T  14191150 atttgttctaattctcatcaatgacaattacaacatgttatggccta 14191104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 35611522 - 35611568
Alignment:
Q  33 atttgttctaattaccatcaatgacaattacaacatgttctggccta 79  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||    
T  35611522 atttgttctaattctcatcaatgacaattacaacatgttatggccta 35611568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 27194351 - 27194395
Alignment:
Q  33 atttgttctaattaccatcaatgacaattacaacatgttctggcct 78  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||    
T  27194351 atttgttctaatt-ctatcaatgacaattacaacatgttctggcct 27194395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 27844165 - 27844209
Alignment:
Q  33 atttgttctaattaccatcaatgacaattacaacatgttctggcct 78  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||    
T  27844165 atttgttctaatt-ctatcaatgacaattacaacatgttctggcct 27844209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 39441423 - 39441378
Alignment:
Q  33 atttgttctaattaccatcaatgacaattacaacatgttctggcct 78  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||    
T  39441423 atttgttctaattctcatcaatgacaattacagcatgttatggcct 39441378  T

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Target: scaffold0356 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 15388 - 15343
Alignment:
Q  33 atttgttctaattaccatcaatgacaattacaacatgttctggcct 78  Q
    |||||||||||||| |||| ||||||||||||||||||| ||||||    
T  15388 atttgttctaattatcatcgatgacaattacaacatgttatggcct 15343  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 16015376 - 16015331
Alignment:
Q  33 atttgttctaattaccatcaatgacaattacaacatgttctggcct 78  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||    
T  16015376 atttgttctaattctcatcaatgacaattacaacatgttctagcct 16015331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 18344638 - 18344682
Alignment:
Q  33 atttgttctaattaccatcaatgacaattacaacatgttctggcct 78  Q
    ||||||||||||| | ||||||||||||||||||||||| ||||||    
T  18344638 atttgttctaatt-ctatcaatgacaattacaacatgttttggcct 18344682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 617930 - 617886
Alignment:
Q  33 atttgttctaattaccatcaatgacaattacaacatgttctggcct 78  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||    
T  617930 atttgttctaatt-ctatcaatgacaattacaacatgttctggcct 617886  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 2331046 - 2331091
Alignment:
Q  33 atttgttctaattaccatcaatgacaattacaacatgttctggcct 78  Q
    |||||||||||||  |||||||||||||||||||||||| ||||||    
T  2331046 atttgttctaattctcatcaatgacaattacaacatgttttggcct 2331091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 48233891 - 48233935
Alignment:
Q  33 atttgttctaattaccatcaatgacaattacaacatgttctggcct 78  Q
    ||||||||||||| | ||||||||||||||||||||||| ||||||    
T  48233891 atttgttctaatt-ctatcaatgacaattacaacatgttatggcct 48233935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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