View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7880_low_11 (Length: 214)
Name: NF7880_low_11
Description: NF7880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7880_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 10011346 - 10011179
Alignment:
| Q |
15 |
atgaatttgatgtccaactcttctaaatcatttatgtctcccttcgaaaaaggaaagnnnnnnnncgcttttgcttcagaaacgagaaagaatatagaac |
114 |
Q |
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| T |
10011346 |
atgaatttgatgtccaactcttctaaatcatttatgtctcccttcgaaaaaggaaagaaaaataactcttctgcttcagaaacgagaaagaatatagaac |
10011247 |
T |
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| Q |
115 |
aaaaagataatttttaacgaaannnnnnnatgtccaattctccaaaacaggagcacctctcttctata |
182 |
Q |
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| T |
10011246 |
aaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctcttctata |
10011179 |
T |
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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 561652 - 561565
Alignment:
| Q |
90 |
tcagaaacgagaaagaatatagaacaaaaagataatttttaacgaaannnnnnnatgtccaattctccaaaacaggagcacctctctt |
177 |
Q |
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|||||||||||||||||||||||| |||| || |||||| || |||| ||||||||||||||||||||||| |||||||||| |
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| T |
561652 |
tcagaaacgagaaagaatatagaagaaaaggacaattttgaaggaaaaaatttgatgtccaattctccaaaacaggaacacctctctt |
561565 |
T |
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