View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7880_low_2 (Length: 495)
Name: NF7880_low_2
Description: NF7880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7880_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 82 - 491
Target Start/End: Complemental strand, 2497162 - 2496753
Alignment:
| Q |
82 |
aattcatttgttattcgccatcaaaaggttagtagaatactacttataattttattttatttaaaccatatacaaacatcgtttctaacccaagtggaga |
181 |
Q |
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| T |
2497162 |
aattcatttgttattcgccatcaaaaggttagtagaatactacttataattttattttatttaaaccatatacaaacatcgtttctaacctaagtggaga |
2497063 |
T |
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| Q |
182 |
gctccttttggcaatgtttatcttaatggcaacgttagtcacaattccaagtcaaatttttagtctattacaatatttatgcattatctagctaggatga |
281 |
Q |
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| T |
2497062 |
gctccttttggcaatgtttatcttaatggcaacgttagtcacaattccaagtcaaatttttagtctattacaatatttatgcattatctagctaggatga |
2496963 |
T |
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| Q |
282 |
atgattaatttattttcccacgctgagatgacgtatgcgtaagattttatttgaaatatnnnnnnntgatttgatctatatatttaatctgcagataacc |
381 |
Q |
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| T |
2496962 |
atgattaatttattttcccacgctgagatgacgtatgcgtaagattttatttgaaatataaaaaaatgatttgatctatatatttaatctgcagataacc |
2496863 |
T |
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| Q |
382 |
cgtgttgttttcagtttgttttaattattgattcacgccacaaatttctacatagattgttcaagtaagccagatatattggtgcatcatatatcttctt |
481 |
Q |
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| T |
2496862 |
cgtgttgttttcagtttgttttaattattgattcacgccacaaatttctacatagattgttcaagtaagccagatatattggtgcatcatatatcttctt |
2496763 |
T |
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| Q |
482 |
cttctcactc |
491 |
Q |
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| T |
2496762 |
cttctgactc |
2496753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 2497274 - 2497219
Alignment:
| Q |
20 |
aataatgagaaaaaatgtgtaatttaattttgataaatgtttgccaacacaagacta |
76 |
Q |
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| T |
2497274 |
aataatgagaaaaa-tgtgtaatttaattttgataaatgtttgccaacacaagacta |
2497219 |
T |
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