View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7880_low_3 (Length: 445)
Name: NF7880_low_3
Description: NF7880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7880_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 142 - 393
Target Start/End: Complemental strand, 1773564 - 1773323
Alignment:
| Q |
142 |
gaggataaataaatttttatagccatgaacaaatcgtttcaaaatagatcaaatggatggctatttatatatagatgatggaaatcctagagaagatgag |
241 |
Q |
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| T |
1773564 |
gaggataaataaatttttacagccatgaacaaatcgtttaaaaatagatcaaatggatcgctatttatatacagatgctgaaaatcctagagaagatgag |
1773465 |
T |
|
| Q |
242 |
ataaacccgaattttaaaatgagattcaaattcaaataaacaaaaatgataagagattttgaatggatcaacctagtaagtaataggaaacgactttgaa |
341 |
Q |
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| T |
1773464 |
ataaacccgaattttaaaatgagattc------aaataaacaaaaatgataagagattttgaatggatcaacct----agtaataggaaacaactttgaa |
1773375 |
T |
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| Q |
342 |
tcgatggtgagaaagataaaacatacatggacaaaagagttgattagtagaa |
393 |
Q |
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| T |
1773374 |
tcgatggtgagagagataaaacatacatggacaaaagaggtgattagtagaa |
1773323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 1773788 - 1773697
Alignment:
| Q |
6 |
gtcgaagaatatgtaaattgcaaatgtaaaaacttgaattaaaattgcaaagttaacatcacaaattgaacgatgtaaagtaagcatatcta |
97 |
Q |
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| T |
1773788 |
gtcgaacaagatgtaaattgcaattgtaaaaacttgaattgaaattgcaaagttaacatcacaaattgaacgatgtaaagtaagcatatcta |
1773697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 18108236 - 18108295
Alignment:
| Q |
13 |
aatatgtaaattgcaaatgtaaaaacttgaattaaaattgcaaagttaacatcacaaatt |
72 |
Q |
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| T |
18108236 |
aatatgtgagttgcaattgtaagaacttgaattaaaattgcaaagataacatcacaaatt |
18108295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 1773632 - 1773599
Alignment:
| Q |
82 |
aaagtaagcatatctataaaacattacctgatgt |
115 |
Q |
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| T |
1773632 |
aaagtaagcatatctataaaacattacccgatgt |
1773599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 211 - 317
Target Start/End: Original strand, 24206908 - 24207014
Alignment:
| Q |
211 |
tatagatgatggaaatcctagagaagatgagataaacccgaattttaaaatgagattcaaattcaaataaacaaaaatgataagagattttgaatggatc |
310 |
Q |
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| T |
24206908 |
tatagatgatgaaaaccctagagaagaagggatgaaccagagttctaaaataagattcaaattcaaataaaaaataaagagaaaagacattgaatggatg |
24207007 |
T |
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| Q |
311 |
aacctag |
317 |
Q |
| |
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||||||| |
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| T |
24207008 |
aacctag |
24207014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 52690949 - 52690902
Alignment:
| Q |
21 |
aattgcaaatgtaaaaacttgaattaaaattgcaaagttaacatcaca |
68 |
Q |
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| T |
52690949 |
aattgcaattgtaaaatcttgaattaaaattgtaaagataacatcaca |
52690902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 20397438 - 20397490
Alignment:
| Q |
21 |
aattgcaaatgtaaaaacttgaattaaaattgcaaagttaacatcacaaattg |
73 |
Q |
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| T |
20397438 |
aattgcaattgtaaaaacatgaattaaaatctcaaagataacctcacaaattg |
20397490 |
T |
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