View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7880_low_5 (Length: 338)

Name: NF7880_low_5
Description: NF7880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7880_low_5
NF7880_low_5
[»] scaffold0061 (2 HSPs)
scaffold0061 (104-258)||(4811-4967)
scaffold0061 (258-322)||(5045-5110)
[»] chr4 (19 HSPs)
chr4 (258-322)||(10627263-10627327)
chr4 (258-322)||(26964864-26964927)
chr4 (258-322)||(18263505-18263571)
chr4 (268-322)||(10620167-10620222)
chr4 (269-322)||(28392002-28392056)
chr4 (268-322)||(10825188-10825243)
chr4 (258-308)||(5708647-5708696)
chr4 (268-322)||(26971758-26971811)
chr4 (269-322)||(47387788-47387842)
chr4 (268-322)||(5715266-5715320)
chr4 (272-322)||(20579275-20579326)
chr4 (269-322)||(55614001-55614055)
chr4 (271-322)||(18270366-18270419)
chr4 (269-322)||(869914-869968)
chr4 (258-322)||(19925585-19925649)
chr4 (269-308)||(8859500-8859540)
chr4 (269-308)||(35224864-35224903)
chr4 (258-308)||(10676409-10676461)
chr4 (258-308)||(10890049-10890101)
[»] scaffold0203 (1 HSPs)
scaffold0203 (258-322)||(29035-29100)
[»] chr6 (10 HSPs)
chr6 (258-322)||(17690289-17690354)
chr6 (258-322)||(29310183-29310248)
chr6 (258-322)||(27297952-27298017)
chr6 (264-322)||(27380082-27380141)
chr6 (264-322)||(27470465-27470524)
chr6 (269-322)||(29317142-29317196)
chr6 (267-322)||(27278660-27278716)
chr6 (267-322)||(27303551-27303607)
chr6 (268-322)||(11652991-11653046)
chr6 (258-303)||(16393328-16393373)
[»] chr3 (19 HSPs)
chr3 (258-322)||(15606278-15606343)
chr3 (258-322)||(10578180-10578246)
chr3 (267-322)||(15599742-15599798)
chr3 (262-322)||(13212593-13212654)
chr3 (271-322)||(10571427-10571479)
chr3 (269-322)||(8491677-8491731)
chr3 (269-322)||(12564439-12564493)
chr3 (269-322)||(13258838-13258892)
chr3 (269-322)||(13691975-13692029)
chr3 (269-322)||(6111393-6111446)
chr3 (269-322)||(13518102-13518156)
chr3 (269-322)||(16481318-16481372)
chr3 (269-322)||(17780025-17780078)
chr3 (269-322)||(19081326-19081379)
chr3 (258-303)||(15356433-15356478)
chr3 (269-308)||(18534945-18534984)
chr3 (269-308)||(18538303-18538342)
chr3 (274-308)||(6288184-6288218)
chr3 (269-308)||(25801468-25801508)
[»] chr1 (6 HSPs)
chr1 (258-322)||(18253323-18253388)
chr1 (269-322)||(27130257-27130311)
chr1 (267-322)||(27309410-27309467)
chr1 (272-322)||(18531376-18531427)
chr1 (268-303)||(9075750-9075785)
chr1 (269-322)||(21169283-21169338)
[»] scaffold0234 (2 HSPs)
scaffold0234 (258-322)||(10060-10126)
scaffold0234 (268-322)||(1177-1233)
[»] chr7 (12 HSPs)
chr7 (258-322)||(11541829-11541894)
chr7 (267-322)||(15153761-15153817)
chr7 (216-258)||(11541710-11541752)
chr7 (258-322)||(11557064-11557129)
chr7 (272-322)||(9979123-9979174)
chr7 (273-322)||(2652852-2652902)
chr7 (269-322)||(12752152-12752206)
chr7 (269-322)||(18562331-18562385)
chr7 (269-322)||(29329081-29329135)
chr7 (269-322)||(11534921-11534976)
chr7 (262-322)||(12739833-12739895)
chr7 (271-308)||(18256679-18256716)
[»] scaffold0433 (1 HSPs)
scaffold0433 (268-322)||(8401-8456)
[»] scaffold0657 (1 HSPs)
scaffold0657 (262-322)||(4010-4071)
[»] chr8 (8 HSPs)
chr8 (216-258)||(24637112-24637154)
chr8 (269-322)||(6095439-6095492)
chr8 (271-308)||(21941975-21942012)
chr8 (269-322)||(15327516-15327569)
chr8 (269-322)||(15507885-15507938)
chr8 (269-322)||(27660698-27660752)
chr8 (275-308)||(24795853-24795886)
chr8 (275-322)||(28549327-28549376)
[»] scaffold1383 (1 HSPs)
scaffold1383 (258-303)||(4-49)
[»] scaffold1199 (1 HSPs)
scaffold1199 (269-308)||(433-472)
[»] scaffold0008 (1 HSPs)
scaffold0008 (258-323)||(229231-229298)
[»] scaffold0390 (1 HSPs)
scaffold0390 (258-322)||(12773-12839)
[»] scaffold0220 (1 HSPs)
scaffold0220 (269-322)||(19606-19660)
[»] chr2 (1 HSPs)
chr2 (269-322)||(18621130-18621184)
[»] scaffold0705 (1 HSPs)
scaffold0705 (258-303)||(7486-7531)
[»] scaffold0213 (1 HSPs)
scaffold0213 (268-308)||(4548-4588)
[»] scaffold0063 (1 HSPs)
scaffold0063 (269-322)||(6822-6877)
[»] scaffold0026 (1 HSPs)
scaffold0026 (272-322)||(26506-26557)
[»] chr5 (4 HSPs)
chr5 (258-322)||(24694309-24694374)
chr5 (258-322)||(24701078-24701143)
chr5 (276-308)||(22546232-22546264)
chr5 (273-305)||(938385-938417)
[»] scaffold0039 (1 HSPs)
scaffold0039 (269-323)||(88004-88059)


Alignment Details
Target: scaffold0061 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 104 - 258
Target Start/End: Original strand, 4811 - 4967
Alignment:
Q  104 aacttgtgaaactcctttcacaaataaaaataaataaactatatacacagaattcagaattcaccgtataactcaatttatttattta--nnnnnnnaat 201  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||    
T  4811 aactggtgaaactcctttcacaaataaaaataaataaactatatacacagaattcagaattcaccgtataactcaatttatttatttatttttttttaat 4910  T
Q  202 aattaaaactaaacacatgattatcgctcttgaatgatattcacaaattaataaatt 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4911 aattaaaactaaacacatgattatcgctcttgaatgatattcacaaattaataaatt 4967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 5045 - 5110
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||| ||||| || |||||||||||| |||||||||||||| ||||||||||||||    
T  5045 tctgataccactgatgggatatttagaggggttttttaaaattttaatcctctttgcggaagaaat 5110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 10627263 - 10627327
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaattttaatccttttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10627263 tctgataccactgaagggattttaagaggggtttttcaaaattttaatccttttgcgtaagaaat 10627327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 26964927 - 26964864
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaattttaatccttttgcggaagaaat 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  26964927 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcc-tctgcggaagaaat 26964864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 18263571 - 18263505
Alignment:
Q  258 tctgataccactgaagggattttaagaggggt-ttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  18263571 tctgataccactgaagggattttaagaggggttttttcaaaattttaatcctctttgcggaagaaat 18263505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 10620167 - 10620222
Alignment:
Q  268 ctgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10620167 ctgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaat 10620222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 28392002 - 28392056
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28392002 tgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaat 28392056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 10825188 - 10825243
Alignment:
Q  268 ctgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  10825188 ctgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaataaat 10825243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 5708696 - 5708647
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcct 308  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5708696 tctgataccactgaagggattttaagagggg-ttttcaaaattttaatcct 5708647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 26971811 - 26971758
Alignment:
Q  268 ctgaagggattttaagaggggtttttcaaaattttaatccttttgcggaagaaat 322  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  26971811 ctgaagggattttaagaggggtttttcaaaattttaatcc-tctgcggaagaaat 26971758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 47387788 - 47387842
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  47387788 tgaagggatttcaagaggggtttttcaaaattttaatcctctttgcggaagaaat 47387842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 5715320 - 5715266
Alignment:
Q  268 ctgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  5715320 ctgaagggattttaagagggg-ttttcaaaattttaatcctctttgcggaagaaat 5715266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 20579275 - 20579326
Alignment:
Q  272 agggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  20579275 agggattttaagaggggtttttcaaaaatttaatcctctttgcggaagaaat 20579326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 55614055 - 55614001
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  55614055 tgaagggattttaagaggggtttttcaaaatttaaatcctctttacggaagaaat 55614001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 18270419 - 18270366
Alignment:
Q  271 aagggattttaagaggggt-ttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  18270419 aagggattttaagaggggttttttcaaaattttaatcctctttgcggaagaaat 18270366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 869968 - 869914
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||| |||||||||| |||||| || ||||||||||||||    
T  869968 tgaagggattttaagagggatttttcaaaaatttaattctctttgcggaagaaat 869914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 19925585 - 19925649
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||| ||||| ||||| |||| |||||||||| ||||||||| ||||||||||||||    
T  19925585 tctgataccactgtaggga-tttaaaagggatttttcaaaaatttaatcctctttgcggaagaaat 19925649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 8859540 - 8859500
Alignment:
Q  269 tgaagggattttaagagggg-tttttcaaaattttaatcct 308  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  8859540 tgaagggattttaagagggggtttttcaaaattttaatcct 8859500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 35224903 - 35224864
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct 308  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  35224903 tgaagggatttcaagagggggttttcaaaattttaatcct 35224864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 10676409 - 10676461
Alignment:
Q  258 tctgataccac--tgaagggattttaagaggggtttttcaaaattttaatcct 308  Q
    |||||||||||  ||||||||||| ||||||| ||||||||| ||||||||||    
T  10676409 tctgataccacattgaagggatttaaagagggttttttcaaatttttaatcct 10676461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 10890049 - 10890101
Alignment:
Q  258 tctgataccac--tgaagggattttaagaggggtttttcaaaattttaatcct 308  Q
    |||||||||||  ||||||||||| ||||||| ||||||||| ||||||||||    
T  10890049 tctgataccacattgaagggatttaaagagggttttttcaaatttttaatcct 10890101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 29035 - 29100
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29035 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaat 29100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 17690289 - 17690354
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17690289 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaat 17690354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 29310248 - 29310183
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29310248 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaat 29310183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 27298017 - 27297952
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  27298017 tctgataccactgaagggattttaagaggggtttttcaaaatattaatcctctttgcggaagaaat 27297952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 27380082 - 27380141
Alignment:
Q  264 accactgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  27380082 accactgaagggattttaagaggggtttttcaaaaatttaatcctctttgcggaagaaat 27380141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 27470465 - 27470524
Alignment:
Q  264 accactgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  27470465 accactgaagggattttaagaggggtttttcaaaaatttaatcctctttgcggaagaaat 27470524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 29317196 - 29317142
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29317196 tgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaat 29317142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 27278716 - 27278660
Alignment:
Q  267 actgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  27278716 actgaagggattttaagaggggtttttcaaaatattaatcctctttgcggaagaaat 27278660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 27303607 - 27303551
Alignment:
Q  267 actgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  27303607 actgaagggattttaagaggggtttttcaaaatattaatcctctttgcggaagaaat 27303551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 11653046 - 11652991
Alignment:
Q  268 ctgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  11653046 ctgaagggattttaagagggttttttcaaaattttaatcctctttgcggaagaaat 11652991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 16393328 - 16393373
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaatttta 303  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||||    
T  16393328 tctgataccactgaagggattttgagaggagtttttcaaaaattta 16393373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 15606278 - 15606343
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15606278 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaat 15606343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 10578180 - 10578246
Alignment:
Q  258 tctgataccactg-aagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10578180 tctgataccactggaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaat 10578246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 15599742 - 15599798
Alignment:
Q  267 actgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15599742 actgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaat 15599798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 262 - 322
Target Start/End: Complemental strand, 13212654 - 13212593
Alignment:
Q  262 ataccactgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  13212654 ataccactgaagggattttaagaggagtttttcaaaattttaatcctctttacggaagaaat 13212593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 10571427 - 10571479
Alignment:
Q  271 aagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10571427 aagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaat 10571479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 8491731 - 8491677
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  8491731 tgaagggattttaagaggggtttttcaaaaatttaatcctctttgcggaagaaat 8491677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 12564493 - 12564439
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  12564493 tgaagggattttaagaggggtttttcaaaattttaatcctctttacggaagaaat 12564439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 13258892 - 13258838
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  13258892 tgaagggattttaagaggggtttttcaaaattttaatcctctttacggaagaaat 13258838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 13692029 - 13691975
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  13692029 tgaagggatttgaagaggggtttttcaaaattttaatcctctttgcggaagaaat 13691975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 6111446 - 6111393
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  6111446 tgaagggattttaagaggg-tttttcaaaattttaatcctctttgcggaagaaat 6111393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 13518156 - 13518102
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||    
T  13518156 tgaagggattttaagaggggtttttcaaaattttattcctctttgcagaagaaat 13518102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 16481318 - 16481372
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  16481318 tgaagggattttaagaggggtttttcaaaatttaaatcctctttacggaagaaat 16481372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 17780025 - 17780078
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  17780025 tgaagggattttaagagggg-ttttcaaaattttaatcctctttgcggaagaaat 17780078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 19081326 - 19081379
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  19081326 tgaagggattttaagagggg-ttttcaaaattttaatcctctttgcggaagaaat 19081379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 15356433 - 15356478
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaatttta 303  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||    
T  15356433 tctgataccactgaagggattttaagagaggtttttccaaatttta 15356478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 18534984 - 18534945
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct 308  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  18534984 tgaagggattttaagagggatttttcaaaattttaatcct 18534945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 18538342 - 18538303
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct 308  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  18538342 tgaagggattttaagagagatttttcaaaattttaatcct 18538303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 308
Target Start/End: Original strand, 6288184 - 6288218
Alignment:
Q  274 ggattttaagaggggtttttcaaaattttaatcct 308  Q
    ||||||||| |||||||||||||||||||||||||    
T  6288184 ggattttaaaaggggtttttcaaaattttaatcct 6288218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 25801508 - 25801468
Alignment:
Q  269 tgaagggattttaagaggggt-ttttcaaaattttaatcct 308  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  25801508 tgaagggatttaaagaggggttttttcaaaattttaatcct 25801468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 18253388 - 18253323
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  18253388 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcctctttgcagaagaaat 18253323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 27130257 - 27130311
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27130257 tgaaaggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaat 27130311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 27309410 - 27309467
Alignment:
Q  267 actgaagggattttaagagggg-tttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  27309410 actgaagggattttaagagggggtttttcaaaattttaatcctctttgcggaagaaat 27309467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 18531376 - 18531427
Alignment:
Q  272 agggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  18531376 agggattttaagagggatttttcaaaattttaatcctctttgcggaagaaat 18531427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 303
Target Start/End: Original strand, 9075750 - 9075785
Alignment:
Q  268 ctgaagggattttaagaggggtttttcaaaatttta 303  Q
    |||||||||||| |||||||||||||||||||||||    
T  9075750 ctgaagggatttaaagaggggtttttcaaaatttta 9075785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 21169283 - 21169338
Alignment:
Q  269 tgaagggattttaaga-ggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||    
T  21169283 tgaagggattttaagaggggggttttcaaaattttgatcctctttgcggaagaaat 21169338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 10060 - 10126
Alignment:
Q  258 tctgataccactgaagggattttaagagggg-tttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  10060 tctgataccactgaagggattttaagaggggttttttcaaaattttaatcctctttgcggaagaaat 10126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 1177 - 1233
Alignment:
Q  268 ctgaagggattttaagagggg-tttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  1177 ctgaagggattttaagaggggttttttcaaaattttaatcctctttgcggaagaaat 1233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 11541829 - 11541894
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  11541829 tctgataccactgaagggattttaagagggttttttcaaaattttaatcctctttacggaagaaat 11541894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 15153817 - 15153761
Alignment:
Q  267 actgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15153817 actgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaat 15153761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 11541710 - 11541752
Alignment:
Q  216 acatgattatcgctcttgaatgatattcacaaattaataaatt 258  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11541710 acatgattatcgctcttgaatgatattcacaaattaataaatt 11541752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 11557064 - 11557129
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||| | | ||||||||||||||    
T  11557064 tctgataccactgaagggattttaagagggggtttttaaaattttaaccgtctttgcggaagaaat 11557129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 9979174 - 9979123
Alignment:
Q  272 agggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  9979174 agggattttaagaggggtttttgaaaattttaatcctctttgcggaagaaat 9979123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 2652852 - 2652902
Alignment:
Q  273 gggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  2652852 gggattttaagaggggtttttcaaaattttaatcctctttacggaagaaat 2652902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 12752206 - 12752152
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  12752206 tgaatggattttaagaggggtttttcaaaattttaatcctctttacggaagaaat 12752152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 18562385 - 18562331
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||||||||| || |||| |||||||||    
T  18562385 tgaagggattttaagaggggtttttcaaaattttaatactctttgaggaagaaat 18562331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 29329135 - 29329081
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||    
T  29329135 tgaagggattttaagaggggattttcaaaattttaatcctctttgcagaagaaat 29329081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 11534921 - 11534976
Alignment:
Q  269 tgaagggattttaagagggg-tttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  11534921 tgaagggattttaagaggggttttttcaaaattttaatcctctttacggaagaaat 11534976  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 322
Target Start/End: Complemental strand, 12739895 - 12739833
Alignment:
Q  262 ataccactgaagggattttaagaggggt-ttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||| ||||||||||||||||||| ||||| |||||||||| || ||||||||||||||    
T  12739895 ataccacttaagggattttaagaggggttttttcgaaattttaattctctttgcggaagaaat 12739833  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 18256679 - 18256716
Alignment:
Q  271 aagggattttaagaggggtttttcaaaattttaatcct 308  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  18256679 aagggatttaaagaggggtttttcaaaaatttaatcct 18256716  T

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Target: scaffold0433 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 8456 - 8401
Alignment:
Q  268 ctgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8456 ctgaagggattttaagaggggtttttcaaaattttaatcctctttgcggaagaaat 8401  T

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Target: scaffold0657 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 262 - 322
Target Start/End: Complemental strand, 4071 - 4010
Alignment:
Q  262 ataccactgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  4071 ataccactgaagggattttaagaggagtttttcaaaattttaatcctctttacggaagaaat 4010  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 24637154 - 24637112
Alignment:
Q  216 acatgattatcgctcttgaatgatattcacaaattaataaatt 258  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24637154 acatgattatcgctcttgaatgatattcacaaattaataaatt 24637112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 6095492 - 6095439
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  6095492 tgaagggattttaagaggg-tttttcaaaattttaatcctctttgcggaagaaat 6095439  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 21942012 - 21941975
Alignment:
Q  271 aagggattttaagaggggtttttcaaaattttaatcct 308  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21942012 aagggattttaagaggggtttttcaaaattttaatcct 21941975  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 15327569 - 15327516
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||    
T  15327569 tgaagggattt-aagagaggtttttcaaaattttaatcctctttgcggaagaaat 15327516  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 15507938 - 15507885
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||    
T  15507938 tgaagggattt-aagagaggtttttcaaaattttaatcctctttgcggaagaaat 15507885  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 27660698 - 27660752
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||| |||||||||||| |||||||||||||||||||||| || |||||||||||    
T  27660698 tgaaaggattttaagagaggtttttcaaaattttaatcctcttagcggaagaaat 27660752  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 24795853 - 24795886
Alignment:
Q  275 gattttaagaggggtttttcaaaattttaatcct 308  Q
    |||||||||||||||| |||||||||||||||||    
T  24795853 gattttaagaggggttattcaaaattttaatcct 24795886  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 322
Target Start/End: Complemental strand, 28549376 - 28549327
Alignment:
Q  275 gattttaagag-gggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||| |||||||||| |||||||||||| ||||||||||||||    
T  28549376 gattttaagagagggtttttcacaattttaatcctctttgcggaagaaat 28549327  T

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Target: scaffold1383 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1383
Description:

Target: scaffold1383; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 258 - 303
Target Start/End: Complemental strand, 49 - 4
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaatttta 303  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  49 tctgataccactgaagggattttaagagaggtttttcaaaatttta 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1199 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1199
Description:

Target: scaffold1199; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 472 - 433
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct 308  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  472 tgaagggattttaagaggggtttttcaaaattttaatcct 433  T

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Target: scaffold0008 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 229231 - 229298
Alignment:
Q  258 tctgataccactgaagggatttta-agaggggtttttcaaaattttaatcct-tttgcggaagaaatt 323  Q
    |||||||||||||||||||||| | |||||| |||||| ||||||||||||| |||||||||||||||    
T  229231 tctgataccactgaagggatttaatagagggttttttccaaattttaatcctctttgcggaagaaatt 229298  T

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Target: scaffold0390 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 12773 - 12839
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttc-aaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||||| ||||||||| |||| |||||||| |||||||||||||| ||||||||||||||    
T  12773 tctgataccactgtagggattttgagagaggtttttcaaaaattttaatcctctttgcggaagaaat 12839  T

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Target: scaffold0220 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 19660 - 19606
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||    
T  19660 tgaagggattttaagaggagtttttcaaaaatttaatcctctttgcggaagaaat 19606  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 18621184 - 18621130
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  18621184 tgaagggattttaagaagggtttttcaaaattttaatcctctttgcggaataaat 18621130  T

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Target: scaffold0705 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0705
Description:

Target: scaffold0705; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 7486 - 7531
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaatttta 303  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||    
T  7486 tctgataccactgaagggattttaagagaggtttttccaaatttta 7531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 4588 - 4548
Alignment:
Q  268 ctgaagggattttaagaggggtttttcaaaattttaatcct 308  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  4588 ctgaagggattttgagaggggtttttcaaaattttaatcct 4548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 6877 - 6822
Alignment:
Q  269 tgaagggatttta-agaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||    
T  6877 tgaagggatttaatagaggggtttttcaaaattttaatcctctttgcggaagaaat 6822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 26557 - 26506
Alignment:
Q  272 agggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||| |||||||||||||||||||||||||||||||| ||| ||||||||||    
T  26557 aggggttttaagaggggtttttcaaaattttaatcctctttacggaagaaat 26506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 24694309 - 24694374
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||| ||||| |||||| ||||||||  ||||||||||| ||| ||||||||||    
T  24694309 tctgataccactgaagagatttaaagaggtgtttttcatgattttaatcctctttacggaagaaat 24694374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 24701078 - 24701143
Alignment:
Q  258 tctgataccactgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaat 322  Q
    |||||||||||||||| ||||| |||||| ||||||||  ||||||||||| ||| ||||||||||    
T  24701078 tctgataccactgaagagatttaaagaggtgtttttcatgattttaatcctctttacggaagaaat 24701143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 22546232 - 22546264
Alignment:
Q  276 attttaagaggggtttttcaaaattttaatcct 308  Q
    |||||||||||||||||||||||||||||||||    
T  22546232 attttaagaggggtttttcaaaattttaatcct 22546264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 305
Target Start/End: Original strand, 938385 - 938417
Alignment:
Q  273 gggattttaagaggggtttttcaaaattttaat 305  Q
    ||||||||||| |||||||||||||||||||||    
T  938385 gggattttaaggggggtttttcaaaattttaat 938417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 88059 - 88004
Alignment:
Q  269 tgaagggattttaagaggggtttttcaaaattttaatcct-tttgcggaagaaatt 323  Q
    |||||||||||||||||||||||||| ||  ||||||||| | |||||||||||||    
T  88059 tgaagggattttaagaggggtttttccaatctttaatcctctatgcggaagaaatt 88004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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