View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7880_low_6 (Length: 331)
Name: NF7880_low_6
Description: NF7880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7880_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 191 - 323
Target Start/End: Complemental strand, 24850023 - 24849891
Alignment:
| Q |
191 |
agatagctccttttgttgttgcaattatctggtgtatcagttcgcacatcttgtgcatgttgcagttattagtgtttggcctctttacttttgtgtactc |
290 |
Q |
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| T |
24850023 |
agatagctccttttgttgttgcaattatctggtgtatcagttcgcacatcttgtgcatgttgcagttattagtgtttggcctctttacttttgtgtactc |
24849924 |
T |
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| Q |
291 |
tctcctaagttgtatcatagattagtaactcca |
323 |
Q |
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| T |
24849923 |
tctcctaagttgtatcatagattagtaactcca |
24849891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 24850213 - 24850089
Alignment:
| Q |
1 |
gtgtttctactaatttttgaattttgacaactaaatttacttagatcagttactatgttgtatcagatcaaggtagcatgnnnnnnnagaggatctgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24850213 |
gtgtttctactaatttttgaattttgacaaataaatttacttagatcagttactatgttgtatcagatcaaggtagcatgtttttttagaggatctgcaa |
24850114 |
T |
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| Q |
101 |
ggtagcatgttcctttggttcttgc |
125 |
Q |
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| T |
24850113 |
ggtagcatgttcctttggttcttgc |
24850089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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