View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7881_high_3 (Length: 380)
Name: NF7881_high_3
Description: NF7881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7881_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 363
Target Start/End: Complemental strand, 36349474 - 36349115
Alignment:
| Q |
11 |
aatgaagtagggcaccagagggaggggtctgaaaaggattattaatggggtgaaaaggacattgagctaagttgcaaaacttagcactagtggtatttca |
110 |
Q |
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| T |
36349474 |
aatgaagtagggcaccagagggaggggtctgaaaaggattattaatggggtgaaaaggacattgagctaagttgcaaaacttagcactagtggtatttca |
36349375 |
T |
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| Q |
111 |
aaatatatagtgcatatgaagctcttttccttttgtgtagactagcatatttcaatttagagataatgcataaatgctaattaaatataatggacatctt |
210 |
Q |
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| T |
36349374 |
aaatatatagtgcatatgaagctcttttccttttgtgtagactagcatatttcaatttagagataatgcataaatgctaattaaatataatggacatctt |
36349275 |
T |
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| Q |
211 |
gtgtgtaaatttggtatttgtagacttttgagttaaaaagtaaaaaccaaaccacaagaactttttctaaaaagagttggaatcgttt-------aaaag |
303 |
Q |
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| T |
36349274 |
gtgtgtaaatttggtatttgtagacttttgagttaaaaagtaaaaaccaaaccacaagaactttttctaagaagagttggaatcgtttaaaacttaaaag |
36349175 |
T |
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| Q |
304 |
actagagaattgtgaaattgttttgttacaaaaagtttcatctttgttagatattataac |
363 |
Q |
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| T |
36349174 |
actagagaattgtgaaattgttttgttacaaaaagtttcatctttgttagatattataac |
36349115 |
T |
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