View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7881_high_4 (Length: 306)

Name: NF7881_high_4
Description: NF7881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7881_high_4
NF7881_high_4
[»] chr3 (2 HSPs)
chr3 (1-291)||(22203103-22203393)
chr3 (238-275)||(35959611-35959648)
[»] chr1 (6 HSPs)
chr1 (81-143)||(17468310-17468372)
chr1 (86-143)||(38733353-38733410)
chr1 (81-146)||(52676326-52676391)
chr1 (86-145)||(38668331-38668390)
chr1 (86-143)||(369606-369663)
chr1 (90-143)||(52961557-52961610)
[»] chr6 (3 HSPs)
chr6 (86-143)||(33494510-33494567)
chr6 (86-145)||(12199859-12199918)
chr6 (86-143)||(24554088-24554145)
[»] chr8 (4 HSPs)
chr8 (237-280)||(1058224-1058267)
chr8 (81-143)||(29907782-29907844)
chr8 (238-275)||(40981008-40981045)
chr8 (83-143)||(8466544-8466604)
[»] chr5 (2 HSPs)
chr5 (81-143)||(1564623-1564685)
chr5 (238-275)||(24030557-24030594)
[»] scaffold0766 (1 HSPs)
scaffold0766 (86-143)||(6245-6302)
[»] scaffold0692 (1 HSPs)
scaffold0692 (86-143)||(5810-5867)
[»] chr4 (2 HSPs)
chr4 (238-275)||(44138447-44138484)
chr4 (238-275)||(49202534-49202571)
[»] chr2 (1 HSPs)
chr2 (239-275)||(43570305-43570341)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 22203103 - 22203393
Alignment:
Q  1 ttttgtaagcaaaagcaagcaagaatcatttgagtttgatgagaggaaaagcccaaatgaggtaacacccatcacttacttgttaaagagtcccacatcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22203103 ttttgtaagcaaaagcaagcaagaatcatttgagtttgatgagaggaaaagcccaaatgaggtaacacccatcacttacttgttaaagagtcccacatcg 22203202  T
Q  101 gatacgagatagtttgaaaaaatgtttataagtgagggcaatcatgttagttgtattgttctttagtgcatttgattaggcttttacttaaactaagaat 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||    
T  22203203 gatacgagatagtttcaaaaaatgtttataagtgagggcaatcatgttagttgtgttgtgctttagtgcatttgattaggcttttacttaaattaagaat 22203302  T
Q  201 taaggtcaatcaccatgatgtctgcaacttatctttaataaacagcttatttgcagcttatagtacaagctcttactatgcatgataagtg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22203303 taaggtcaatcaccatgatgtctgcaacttatctttaataaacagcttatttgcagcttatagtacaagctcttactatgcatgataagtg 22203393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 35959648 - 35959611
Alignment:
Q  238 ataaacagcttatttgcagcttatagtacaagctctta 275  Q
    |||||||||||||||||||||||||  |||||||||||    
T  35959648 ataaacagcttatttgcagcttatatcacaagctctta 35959611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 17468310 - 17468372
Alignment:
Q  81 tgttaaagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 143  Q
    |||||||||||||||||||||||| ||||| || ||| || ||||||||||||| ||||||||    
T  17468310 tgttaaagagtcccacatcggataagagatggtctgacaatatgtttataagtgggggcaatc 17468372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 38733353 - 38733410
Alignment:
Q  86 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 143  Q
    ||||||||||||||||||| | ||| || ||| || ||||||||||||||||||||||    
T  38733353 aagagtcccacatcggatatgtgatggtctgacaatatgtttataagtgagggcaatc 38733410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 52676391 - 52676326
Alignment:
Q  81 tgttaaagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatcatg 146  Q
    |||||||||||||||||| ||||| ||||| || |||| || |||||||||||| ||| |||||||    
T  52676391 tgttaaagagtcccacattggataagagatggtatgaacaagtgtttataagtgggggtaatcatg 52676326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 38668331 - 38668390
Alignment:
Q  86 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatcat 145  Q
    ||||||||||||||||||| | ||| |||||| ||  |||||||||||| ||||||||||    
T  38668331 aagagtcccacatcggatatgtgatggtttgacaatgtgtttataagtgggggcaatcat 38668390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 369606 - 369663
Alignment:
Q  86 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 143  Q
    ||||||||||||||||  | |||||||| ||||||  |||||||||||| ||||||||    
T  369606 aagagtcccacatcgggcaggagatagtctgaaaatgtgtttataagtgggggcaatc 369663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 52961557 - 52961610
Alignment:
Q  90 gtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 143  Q
    ||||||||||||||| ||||| || ||| ||  |||||||||||||||||||||    
T  52961557 gtcccacatcggataggagatggtctgacaatgtgtttataagtgagggcaatc 52961610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 33494510 - 33494567
Alignment:
Q  86 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 143  Q
    ||||||||||||||||||| ||||| | ||||||| ||||||||||||| ||||||||    
T  33494510 aagagtcccacatcggataggagatggcttgaaaatatgtttataagtgggggcaatc 33494567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 12199918 - 12199859
Alignment:
Q  86 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatcat 145  Q
    ||||||||||||||||||| || || || ||| || ||||||||||||| ||||||||||    
T  12199918 aagagtcccacatcggataagatatggtctgacaatatgtttataagtgggggcaatcat 12199859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 24554088 - 24554145
Alignment:
Q  86 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 143  Q
    ||||||||||||||||||| ||||| || ||| || || |||||||||| ||||||||    
T  24554088 aagagtcccacatcggataggagatggtctgacaatatatttataagtgggggcaatc 24554145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 1058267 - 1058224
Alignment:
Q  237 aataaacagcttatttgcagcttatagtacaagctcttactatg 280  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  1058267 aataaacagcttatttgcagcttatagcacaagcgcttactatg 1058224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 29907844 - 29907782
Alignment:
Q  81 tgttaaagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 143  Q
    |||||||||||||||||||||||| |||||||| ||| ||  |||||||||||| || |||||    
T  29907844 tgttaaagagtcccacatcggataagagatagtctgacaatgtgtttataagtggggtcaatc 29907782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Original strand, 40981008 - 40981045
Alignment:
Q  238 ataaacagcttatttgcagcttatagtacaagctctta 275  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  40981008 ataaacagcttatttgcagcttatagcacaagcgctta 40981045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 8466604 - 8466544
Alignment:
Q  83 ttaaagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 143  Q
    ||||||| |||||||||||||| ||||| || |||| || |||||||||||| ||| ||||    
T  8466604 ttaaagaatcccacatcggataagagatggtctgaacaagtgtttataagtgggggaaatc 8466544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 1564685 - 1564623
Alignment:
Q  81 tgttaaagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 143  Q
    |||||||||||||||||||||||| ||||| || ||| ||  || ||||||||| ||||||||    
T  1564685 tgttaaagagtcccacatcggataagagatggtctgacaatgtgattataagtgggggcaatc 1564623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 24030594 - 24030557
Alignment:
Q  238 ataaacagcttatttgcagcttatagtacaagctctta 275  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  24030594 ataaacagcttatttgcagcttatagcacaagcactta 24030557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 6245 - 6302
Alignment:
Q  86 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 143  Q
    |||||||||||||| |||| |||||||| ||| ||  |||||||||||| ||||||||    
T  6245 aagagtcccacatcagataagagatagtctgacaatgtgtttataagtgggggcaatc 6302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 5867 - 5810
Alignment:
Q  86 aagagtcccacatcggatacgagatagtttgaaaaaatgtttataagtgagggcaatc 143  Q
    ||||||||||||||||||| || ||||| ||| ||  |||||||||||| ||||||||    
T  5867 aagagtcccacatcggataagacatagtctgacaatgtgtttataagtgggggcaatc 5810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Original strand, 44138447 - 44138484
Alignment:
Q  238 ataaacagcttatttgcagcttatagtacaagctctta 275  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  44138447 ataaacagcttatttgcagcttttagtacaagcactta 44138484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Original strand, 49202534 - 49202571
Alignment:
Q  238 ataaacagcttatttgcagcttatagtacaagctctta 275  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  49202534 ataaacaacttatttgcagcttatagtacaagcactta 49202571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 43570305 - 43570341
Alignment:
Q  239 taaacagcttatttgcagcttatagtacaagctctta 275  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  43570305 taaacagcttatttgcagcttatagcacaagcactta 43570341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University