View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7881_low_2 (Length: 391)
Name: NF7881_low_2
Description: NF7881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7881_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 19809667 - 19809308
Alignment:
| Q |
19 |
accacttagaattcattatccataatacaacactacatggacattccaggagcaatgagacatactcaacggttccatgttcattcaaagaaccagacac |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19809667 |
accacttagaattcattatccataatacaacactacatggacattccaggagcaatgagacatactcaacggttccatgttcatccaaagaaccagacac |
19809568 |
T |
|
| Q |
119 |
caaattaagaaaacagatgtgaaacacggttctaagattccacattctcaaattaggatataaaatttgaacctcatcaagaacatttgtataatcacac |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19809567 |
caaattaagaaaacagatgtgaaacacggttctaagattccacattctcaaattaggatataaaatttgaacctcatcaagaacatttgtataatcacac |
19809468 |
T |
|
| Q |
219 |
aaatatgttgtatataatattttctcaagcatcaagagataacactaacaaaatgggttcaagagaagatccataacaaacctcataagagttacacatg |
318 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19809467 |
aaatatgttgtatataattttttctcaagcatcaagagataacactaacaaaatgggttcaagagaagatccataa-aaacctcataagagttacacatg |
19809369 |
T |
|
| Q |
319 |
taatcaacattctatcaatttctataagtacacagtttacactgattttcaacaagaataa |
379 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19809368 |
taatcaacattctatcaatttctataagtacacagtttacactgattttcaacaagaataa |
19809308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 39139411 - 39139051
Alignment:
| Q |
19 |
accacttagaattcattatccataatacaacactacatggacattccaggagcaatgagacatactcaacggttccatgttcattcaaagaaccagacac |
118 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39139411 |
accacttagaattcattatccataatataacactgcatggacgttccaggagcaacgagacatactcaacggttccatgttcatccaaagaaccagacac |
39139312 |
T |
|
| Q |
119 |
caaattaagaaaacagatgtgaaacacggttctaagattccacattctcaaattaggatataaaatttgaacctcatcaagaacatttgtataatcacac |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39139311 |
caaattaagaaaacagatgtgaaacacggttctaagagtccacattctcaaaataggatataaaatttgaacctcatcaagaacatttgtataatcacat |
39139212 |
T |
|
| Q |
219 |
aaatatgttgtatataatattttctcaagcatcaagagataacactaacaaaatgggttcaagagaagatccataacaaacctcataagagttacacatg |
318 |
Q |
| |
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|||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39139211 |
aaatatgttgcatataattttttctcaagcatcaagagataacactaacaatatggattcaagagaagatccataacaaacctcataagagttacacatg |
39139112 |
T |
|
| Q |
319 |
taatcaacattctatcaatttctataagtacacagtttacactgattttcaacaagaataa |
379 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
39139111 |
taatcaacattctatcaatttctttaagttcacagtttacactgattttcaacaagaataa |
39139051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 26 - 322
Target Start/End: Original strand, 39472182 - 39472500
Alignment:
| Q |
26 |
agaattcattatccataatacaacactacatggacattccaggagcaatgagacatactcaacggttccatgttcattcaaagaaccagacaccaaatta |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| | |||| |||| | ||||||||||| ||||| |||||||||||||| | ||||| |
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|
| T |
39472182 |
agaattcattatccataatacaacactacaaggacattccaggagaactgagtcatatttaacggttccatattcatccaaagaaccagacatc-aatta |
39472280 |
T |
|
| Q |
126 |
agaaaacagatgtg----------------------aaacacggttctaagattccacattctcaaattaggatataaaatttgaacctcatcaagaaca |
203 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || | |||| |||| |
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| T |
39472281 |
agaaaacagatgtgaaacacttgcaaaccatatttcaaacacggttctaagattccacattctcaaaataggatataaaattcaaaaatattcaataaca |
39472380 |
T |
|
| Q |
204 |
tttgtataatcacacaaatatgttgtatataa-tattttctcaagcatcaagagataacactaacaaaatgggttcaagagaagatccataacaaacctc |
302 |
Q |
| |
|
||||| ||| ||||||||||||| ||| ||| | ||||||||||||||| || ||||||| ||| ||| || |||||| |||||||||||||||| |
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|
| T |
39472381 |
attgtacaatgacacaaatatgttttatttaatttttttctcaagcatcagcagctaacacttgcaatttggattttagagaatatccataacaaacctc |
39472480 |
T |
|
| Q |
303 |
ataagagttacacatgtaat |
322 |
Q |
| |
|
|||||||||||| ||||||| |
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| T |
39472481 |
ataagagttacaaatgtaat |
39472500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 198 - 347
Target Start/End: Complemental strand, 39452618 - 39452469
Alignment:
| Q |
198 |
agaacatttgtataatcacacaaatatgttgtatataatattttctcaagcatcaagagataacactaacaaaatgggttcaagagaagatccataacaa |
297 |
Q |
| |
|
|||||||||||| | ||||||||||||| || ||||||| ||||| |||||||||| || |||| | ||| || || ||||||||||||||||||| |
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|
| T |
39452618 |
agaacatttgtacagtcacacaaatatgatgaatataattttttcccaagcatcaatagctaacggttgcaatattaatttaagagaagatccataacaa |
39452519 |
T |
|
| Q |
298 |
acctcataagagttacacatgtaatcaacattctatcaatttctataagt |
347 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| || ||||||| ||||| |
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| T |
39452518 |
acctaataagagttacacctgtaatcaacattcaattaatttctctaagt |
39452469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 39453435 - 39453330
Alignment:
| Q |
40 |
ataatacaacactacatggacattccaggagcaatgagacatactcaacggttccatgttcattcaaagaaccagacaccaaattaagaaaacagatgtg |
139 |
Q |
| |
|
||||| |||| ||||| |||||||||||||||||||||||| | | |||||||||| ||| | ||||||| |||||||||||||||||||||||||| | |
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|
| T |
39453435 |
ataatccaactctacaaggacattccaggagcaatgagacacatttaacggttccaagttactccaaagaagcagacaccaaattaagaaaacagatgag |
39453336 |
T |
|
| Q |
140 |
aaacac |
145 |
Q |
| |
|
|||||| |
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|
| T |
39453335 |
aaacac |
39453330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 39412699 - 39412805
Alignment:
| Q |
138 |
tgaaacacggttctaagattccacattctcaaattaggatataaaatttgaacctcatcaagaacatttgtataatcacacaaatatgttgtatataata |
237 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| ||||| ||||| |||| ||||| |||| |||||||| |||||||||||||||| |
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|
| T |
39412699 |
tgaaacacggttctaagattcagcattctcaaagtaggatatcaaattcaaacctattcaaaaacatctgtacaatcacac--atatgttgtatataatt |
39412796 |
T |
|
| Q |
238 |
ttttctcaa |
246 |
Q |
| |
|
||||||||| |
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|
| T |
39412797 |
ttttctcaa |
39412805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 39153469 - 39153398
Alignment:
| Q |
307 |
gagttacacatgtaatcaacattctatcaatttctataagtacacagtttacactgattttcaacaagaata |
378 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||| |||||| | ||||||||| |||||||||| |
|
|
| T |
39153469 |
gagttacacaagtaatcaacattctatcaatttctattagttcacagtgtgcactgatttcaaacaagaata |
39153398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 39153658 - 39153555
Alignment:
| Q |
138 |
tgaaacacggttctaagattccacattctcaaattaggatataaaatttgaacctcatcaagaacatttgtataatcacacaaatatgttgtatataata |
237 |
Q |
| |
|
||||||| | ||||||||||| | ||||||||| ||| |||| |||||||||| | ||||||||||| ||| ||||||||||||||| |||||||| |
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|
| T |
39153658 |
tgaaacatgtttctaagattcaaaattctcaaaatagaatattaaatttgaacgtattcaagaacattcgtacgttcacacaaatatgttttatataatt |
39153559 |
T |
|
| Q |
238 |
tttt |
241 |
Q |
| |
|
|||| |
|
|
| T |
39153558 |
tttt |
39153555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 39153792 - 39153673
Alignment:
| Q |
26 |
agaattcattatccataatacaacactacatggacattccaggagcaatgagacatactcaacggttccatgttcattcaaagaaccagacaccaaatta |
125 |
Q |
| |
|
||||||||| |||||| || | | ||||| || ||||||||||||||||||||| | | || || |||| |||||| |||| ||||||| ||||| ||| |
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|
| T |
39153792 |
agaattcataatccattatcaacctctacaagggcattccaggagcaatgagacacattaaatggctccaagttcatccaaataaccagataccaactta |
39153693 |
T |
|
| Q |
126 |
agaaaacagatgtgaaacac |
145 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
39153692 |
agaaaacgaatgtgaaacac |
39153673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 39472515 - 39472566
Alignment:
| Q |
305 |
aagagttacacatgtaatcaacattctatcaatttctataagtacacagttt |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||| |||||||| |
|
|
| T |
39472515 |
aagagttacacatgtaatcaacattctatcaatatagataagttcacagttt |
39472566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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