View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7881_low_3 (Length: 390)

Name: NF7881_low_3
Description: NF7881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7881_low_3
NF7881_low_3
[»] chr5 (19 HSPs)
chr5 (6-373)||(37429149-37429525)
chr5 (11-299)||(37412657-37412945)
chr5 (182-314)||(37594800-37594932)
chr5 (200-314)||(37533576-37533690)
chr5 (182-314)||(37400364-37400496)
chr5 (182-314)||(37824371-37824503)
chr5 (200-314)||(37703144-37703258)
chr5 (11-311)||(37436186-37436486)
chr5 (11-115)||(37640547-37640651)
chr5 (182-314)||(37697263-37697395)
chr5 (11-115)||(37697462-37697566)
chr5 (11-115)||(37400193-37400297)
chr5 (204-312)||(37640350-37640458)
chr5 (191-314)||(37712100-37712223)
chr5 (11-45)||(37392339-37392373)
chr5 (222-314)||(37392484-37392576)
chr5 (11-115)||(37533775-37533879)
chr5 (11-115)||(37824570-37824674)
chr5 (11-45)||(37595069-37595103)
[»] chr4 (4 HSPs)
chr4 (11-115)||(16842257-16842361)
chr4 (214-314)||(16842460-16842560)
chr4 (220-261)||(24217330-24217371)
chr4 (79-143)||(24217189-24217253)
[»] chr3 (1 HSPs)
chr3 (11-45)||(14553783-14553817)


Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 6 - 373
Target Start/End: Complemental strand, 37429525 - 37429149
Alignment:
Q  6 tgttcttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattat-----tttcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||    
T  37429525 tgttcttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattatattattttcaa 37429426  T
Q  101 acctcacacacctcactacctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37429425 acctcacacacctcactacctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaattttagtatt 37429326  T
Q  201 ttcctttaataa----cctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggccc 296  Q
    ||||||||||||    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429325 ttcctttaataaataacctaacaggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggccc 37429226  T
Q  297 aattccgattcaaatcaccaaattttccaagttacattttgttcttttacaatctaacaacttaaacggaacaattc 373  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37429225 aattccgattcaaatcaccaaattttccaagttaaattttgttcttttacaatctaacaacttaaacggaacaattc 37429149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 37412657 - 37412945
Alignment:
Q  11 ttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacaca 110  Q
    |||||| |||||| ||||||||||||||||||||| | || ||||| ||   ||||||  |||  ||||| || ||| ||||| ||||||| ||| ||||    
T  37412657 ttcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaacggtgaaatcccatcattactttcaaatctcgcaca 37412756  T
Q  111 cctcactacctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttcctttaat 210  Q
     ||||||  ||| | ||||| | | |||  ||| | |||| |||||| | || ||||||| |||||||   |||||||| ||||||   |||||| |||     
T  37412757 tctcacttacttggatcttgaacaaaatgcctttaccggtttgatcttgaatatgttccataagcttattaaattagaatatttagatatttcctctaac 37412856  T
Q  211 aacctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaat 299  Q
    ||| | | ||| ||| |||| ||||||||||| |||||| |||| ||||||   ||||||||||| ||||||||||||| |||||||||    
T  37412857 aacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 37412945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 314
Target Start/End: Complemental strand, 37594932 - 37594800
Alignment:
Q  182 aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaa 281  Q
    |||| ||| |||||| | |||||||||| ||||||| ||||||||||||||||||| | ||||||||| |||| |||||||| |||| |||||| | |||    
T  37594932 aattggaatatttagcactttcctttaacaacctaacaggccaagttccatcatcactttttcatctacctcacctttctattttaggtttatcatataa 37594833  T
Q  282 taaattagatggcccaattccgattcaaatcac 314  Q
     ||| ||| ||| |||||||| ||| |||||||    
T  37594832 caaactagttgggccaattccaattgaaatcac 37594800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 314
Target Start/End: Complemental strand, 37533690 - 37533576
Alignment:
Q  200 tttcctttaataacctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaat 299  Q
    |||||| ||| ||||||| ||||||||||||||||||| | ||||||||| |||| |||||||| |||| |||||| | ||| ||| ||| ||| |||||    
T  37533690 tttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcacctttctattttaggtttatcatataacaaactagttgggccaat 37533591  T
Q  300 tccgattcaaatcac 314  Q
    ||| ||| |||||||    
T  37533590 tccaattgaaatcac 37533576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 314
Target Start/End: Original strand, 37400364 - 37400496
Alignment:
Q  182 aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaa 281  Q
    |||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||| |||| ||||||   ||| ||||||| | |||    
T  37400364 aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttatcatctaa 37400463  T
Q  282 taaattagatggcccaattccgattcaaatcac 314  Q
     ||| ||| |||||||||||| ||| |||||||    
T  37400464 caaactagttggcccaattccaattgaaatcac 37400496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 314
Target Start/End: Complemental strand, 37824503 - 37824371
Alignment:
Q  182 aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaa 281  Q
    |||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||| |||| ||||||   ||| ||||||| | |||    
T  37824503 aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttcttatttatatttatcatctaa 37824404  T
Q  282 taaattagatggcccaattccgattcaaatcac 314  Q
     ||| ||| |||||||||||| ||| |||||||    
T  37824403 caaactagttggcccaattccaattgaaatcac 37824371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 314
Target Start/End: Complemental strand, 37703258 - 37703144
Alignment:
Q  200 tttcctttaataacctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaat 299  Q
    |||||| ||| || |||| ||||||||||||||||||| | ||||||||| |||| |||| ||| |||| |||||| ||||| ||| ||| ||| |||||    
T  37703258 tttcctctaacaagctaacaggccaagttccatcatcactttttcatctacctcacctttttattttaggtttatcatttaacaaactagttgggccaat 37703159  T
Q  300 tccgattcaaatcac 314  Q
    ||| ||| |||||||    
T  37703158 tccaattgaaatcac 37703144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 37436486 - 37436186
Alignment:
Q  11 ttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacaca 110  Q
    ||||||||||||||||||||||||||||||||||| | || ||||| || |  || ||  |||   |||||||| |||||||| ||||||||| | ||||    
T  37436486 ttcctctatctttgtggaacctcactcaactaacatatttggacctttcaagaaataaacttaacagtgagatttcaccattactttcaaacccctcaca 37436387  T
Q  111 cctcactacctttggtcttggaaataataacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttcctttaat 210  Q
    ||||| |   | ||  |||||| |||||||||| | |||||  ||  |  |||| |  || ||  | ||| |||| ||| |||||  | ||||||  ||     
T  37436386 cctcatttattgtgaccttggatataataactttagcggtagcattccaaatgtttatcaaaatttaaccaaattggaatatttatcactttcctccaac 37436287  T
Q  211 aacctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaa 310  Q
    | ||||| ||||||||||||||||||| | ||||||||| | || ||||||   ||||||||||| ||||| ||| ||| |||||||||||| ||| |||    
T  37436286 agcctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttagatttatcatttaacaaactagttggcccaattccaattgaaa 37436187  T
Q  311 t 311  Q
    |    
T  37436186 t 37436186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 37640651 - 37640547
Alignment:
Q  11 ttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacaca 110  Q
    ||||||||||||||||||||||||| ||||||||| | || ||||| ||   ||| ||  ||| |||||||||  |||||||| |||||||||||| |||    
T  37640651 ttcctctatctttgtggaacctcacccaactaacatatttggacctttcatttaataaacttaatggtgagatctcaccattactttcaaacctcaaaca 37640552  T
Q  111 cctca 115  Q
    |||||    
T  37640551 cctca 37640547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 314
Target Start/End: Complemental strand, 37697395 - 37697263
Alignment:
Q  182 aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaa 281  Q
    |||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||| | || ||||||   |||| |||||| |||||    
T  37697395 aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttaggtttatcatttaa 37697296  T
Q  282 taaattagatggcccaattccgattcaaatcac 314  Q
     ||| ||| ||| |||||||| ||| |||||||    
T  37697295 caaactagttgggccaattccaattgaaatcac 37697263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 37697566 - 37697462
Alignment:
Q  11 ttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacaca 110  Q
    ||||||||||||||||||||||||||||||||||| | || || || || | ||| ||  |||  ||||||||  |||||||| |||||||||||| |||    
T  37697566 ttcctctatctttgtggaacctcactcaactaacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttcaaacctcaaaca 37697467  T
Q  111 cctca 115  Q
    |||||    
T  37697466 cctca 37697462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 37400193 - 37400297
Alignment:
Q  11 ttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacaca 110  Q
    ||||||||||||||||||||||||| ||||||||| | || ||||| ||   ||| ||  |||  ||||||||  |||||||| |||||||||||| |||    
T  37400193 ttcctctatctttgtggaacctcacccaactaacatatttggacctttcatttaataaacttaacggtgagatctcaccattactttcaaacctcaaaca 37400292  T
Q  111 cctca 115  Q
    |||||    
T  37400293 cctca 37400297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 312
Target Start/End: Complemental strand, 37640458 - 37640350
Alignment:
Q  204 ctttaataacctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccg 303  Q
    |||||| ||||||| ||||||||||||||||||| | ||||||||| |||| ||||||   ||| ||||| | | ||| ||| ||| ||||||||||||     
T  37640458 ctttaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttagcatataacaaactagttggcccaattcca 37640359  T
Q  304 attcaaatc 312  Q
    ||| |||||    
T  37640358 attgaaatc 37640350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 314
Target Start/End: Complemental strand, 37712223 - 37712100
Alignment:
Q  191 atttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattaga 290  Q
    |||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||| |||| ||||||   ||| ||||| |   ||| ||| |||     
T  37712223 atttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttagcagataacaaactagt 37712124  T
Q  291 tggcccaattccgattcaaatcac 314  Q
    |||||||||||| ||| |||||||    
T  37712123 tggcccaattccaattgaaatcac 37712100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 37392339 - 37392373
Alignment:
Q  11 ttcctctatctttgtggaacctcactcaactaaca 45  Q
    |||||||||||||||||||||||||||||||||||    
T  37392339 ttcctctatctttgtggaacctcactcaactaaca 37392373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 37392484 - 37392576
Alignment:
Q  222 ccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcac 314  Q
    |||||||||||||||| | ||||||||| |  | |||||| | ||||||||||| | ||| ||| ||| ||||||||||||  ||||||||||    
T  37392484 ccaagttccatcatcactttttcatctacccaacctttcttttttagatttatcatctaacaaactagttggcccaattccagttcaaatcac 37392576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 37533879 - 37533775
Alignment:
Q  11 ttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacaca 110  Q
    ||||||||||||||||||||||||| ||||||||| | || || || ||   ||| ||  |||  ||||||||  |||||||| |||||||||||| |||    
T  37533879 ttcctctatctttgtggaacctcacccaactaacatatttggatctttcacataataaacttaacggtgagatctcaccattactttcaaacctcaaaca 37533780  T
Q  111 cctca 115  Q
    |||||    
T  37533779 cctca 37533775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 37824674 - 37824570
Alignment:
Q  11 ttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacaca 110  Q
    ||||||||||||||||||||||||| ||||||||| | || ||||| ||    || ||  |||  ||||||||  |||||||| |||||||||||| |||    
T  37824674 ttcctctatctttgtggaacctcacccaactaacatatttggacctttcacaaaataagcttaacggtgagatctcaccattactttcaaacctcaaaca 37824575  T
Q  111 cctca 115  Q
    |||||    
T  37824574 cctca 37824570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 37595103 - 37595069
Alignment:
Q  11 ttcctctatctttgtggaacctcactcaactaaca 45  Q
    ||||||||||||||||||||||||| |||||||||    
T  37595103 ttcctctatctttgtggaacctcacccaactaaca 37595069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 16842257 - 16842361
Alignment:
Q  11 ttcctctatctttgtggaacctcactcaactaacaaagttagacctctctactaacaactttagtggtgagattccaccattattttcaaacctcacaca 110  Q
    ||||||||||||||||||||||||||||||||||| | || || || || | ||| ||  |||  ||||||||  |||||||| |||||||||||| |||    
T  16842257 ttcctctatctttgtggaacctcactcaactaacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttcaaacctcaaaca 16842356  T
Q  111 cctca 115  Q
    |||||    
T  16842357 cctca 16842361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 314
Target Start/End: Original strand, 16842460 - 16842560
Alignment:
Q  214 ctaataggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatca 313  Q
    |||| ||||||||||||||||||| | ||||||||| || | |||||||  ||| ||||||| ||||| ||| | | |||||||||||| ||| ||||||    
T  16842460 ctaacaggccaagttccatcatcactttttcatctaccttatctttctaatttatatttatcatttaacaaactggttggcccaattccaattgaaatca 16842559  T
Q  314 c 314  Q
    |    
T  16842560 c 16842560  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 24217330 - 24217371
Alignment:
Q  220 ggccaagttccatcatcattgtttcatctaactcagctttct 261  Q
    |||||| ||||||||||||||||| |||||||||| ||||||    
T  24217330 ggccaaattccatcatcattgtttaatctaactcaactttct 24217371  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 24217189 - 24217253
Alignment:
Q  79 gagattccaccattattttcaaacctcacacacctcactacctttggtcttggaaataataactt 143  Q
    ||||| ||| ||||| ||||||||||||||||||||||| |||| | ||||  || |||||||||    
T  24217189 gagatcccatcattactttcaaacctcacacacctcacttccttagatcttcaaattaataactt 24217253  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 14553817 - 14553783
Alignment:
Q  11 ttcctctatctttgtggaacctcactcaactaaca 45  Q
    |||||||||||||||||||||||||||||||||||    
T  14553817 ttcctctatctttgtggaacctcactcaactaaca 14553783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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