View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7881_low_6 (Length: 313)

Name: NF7881_low_6
Description: NF7881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7881_low_6
NF7881_low_6
[»] chr6 (1 HSPs)
chr6 (18-313)||(2382517-2382812)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 2382517 - 2382812
Alignment:
Q  18 attttcaatgaatgcactttgggtgattaaaactttgaaataaacatgttaatttggacaagaaattcttccttatagttctgtctaattttttaagatg 117  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2382517 attttcaatgaatgcactttgagtgattaaaactttgaaataaacatgttaatttggacaagaaattcttccttatagttctgtctaattttttaagatg 2382616  T
Q  118 gagtttcattttgatacaccgatggtgtaaagaatttttacagcgttagagaaccccgactaattacatgtttggctatagaagtagttgtggataaaac 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  2382617 gagtttcattttgatacaccgacggtgtaaagaatttttacagcgttagagaaccacgactaattacatgtttggctatggaagtagttgtggataaaac 2382716  T
Q  218 caaatattttgagtgatttgatgattatgattaattcacagtgaagattctttttggccggcagtgtataagtatctaatccttttaaagattatt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  2382717 caaatattttgagtgatttgatgattatgattaattcacagtgaagattctttttggccggcagtgtataagaatcaaatccttttaaagattatt 2382812  T

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